Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS53Q5VIR6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 PHGDH-210ENST00000641115 1638 ntBASIC23.73■■□□□ 1.39
VPS53Q5VIR6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.73■■□□□ 1.39
VPS53Q5VIR6 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.73■■□□□ 1.39
VPS53Q5VIR6 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 PRORSD1P-201ENST00000295112 541 ntBASIC23.72■■□□□ 1.39
VPS53Q5VIR6 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 AC018553.1-201ENST00000616682 1458 ntBASIC23.72■■□□□ 1.39
VPS53Q5VIR6 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS53Q5VIR6 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 ITM2C-210ENST00000620962 501 ntBASIC23.71■■□□□ 1.39
VPS53Q5VIR6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VPS53Q5VIR6 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.7■■□□□ 1.39
VPS53Q5VIR6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
VPS53Q5VIR6 AC116351.2-201ENST00000606540 1585 ntBASIC23.7■■□□□ 1.38
VPS53Q5VIR6 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 MTDHP1-201ENST00000605323 784 ntBASIC23.7■■□□□ 1.38
VPS53Q5VIR6 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.7■■□□□ 1.38
VPS53Q5VIR6 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 KRT17P3-201ENST00000420566 1262 ntBASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS53Q5VIR6 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms