Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC27.39■■□□□ 1.98
MSH6P52701 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
MSH6P52701 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.97
MSH6P52701 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
MSH6P52701 GOLGA6L3-201ENST00000507199 1679 ntBASIC27.39■■□□□ 1.97
MSH6P52701 DYM-203ENST00000442713 2147 ntTSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
MSH6P52701 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC27.38■■□□□ 1.97
MSH6P52701 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC27.38■■□□□ 1.97
MSH6P52701 PRELID1P1-202ENST00000567272 903 ntBASIC27.38■■□□□ 1.97
MSH6P52701 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 CR769767.2-201ENST00000622735 460 ntBASIC27.38■■□□□ 1.97
MSH6P52701 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC27.38■■□□□ 1.97
MSH6P52701 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH6P52701 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
MSH6P52701 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC27.37■■□□□ 1.97
MSH6P52701 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC27.37■■□□□ 1.97
MSH6P52701 AC111152.3-201ENST00000569699 673 ntBASIC27.37■■□□□ 1.97
MSH6P52701 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC27.37■■□□□ 1.97
MSH6P52701 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
MSH6P52701 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 KRT8P10-201ENST00000450021 1447 ntBASIC27.37■■□□□ 1.97
MSH6P52701 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC27.37■■□□□ 1.97
MSH6P52701 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC27.37■■□□□ 1.97
MSH6P52701 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH6P52701 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC27.36■■□□□ 1.97
MSH6P52701 AC004870.1-201ENST00000315132 882 ntBASIC27.36■■□□□ 1.97
MSH6P52701 LY6E-213ENST00000522528 606 ntTSL 3 BASIC27.36■■□□□ 1.97
MSH6P52701 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 H19-201ENST00000411754 1788 ntTSL 5 BASIC27.36■■□□□ 1.97
MSH6P52701 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC27.36■■□□□ 1.97
MSH6P52701 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC27.36■■□□□ 1.97
MSH6P52701 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
MSH6P52701 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC27.36■■□□□ 1.97
MSH6P52701 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC27.35■■□□□ 1.97
MSH6P52701 KRT17P6-201ENST00000453795 1220 ntBASIC27.35■■□□□ 1.97
MSH6P52701 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC27.35■■□□□ 1.97
MSH6P52701 CA15P1-201ENST00000481698 905 ntBASIC27.35■■□□□ 1.97
MSH6P52701 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC27.35■■□□□ 1.97
MSH6P52701 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC27.35■■□□□ 1.97
MSH6P52701 HYMAI.1-201ENST00000620949 238 ntBASIC27.35■■□□□ 1.97
MSH6P52701 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH6P52701 KRT8P45-201ENST00000414328 1447 ntBASIC27.35■■□□□ 1.97
MSH6P52701 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC27.35■■□□□ 1.97
MSH6P52701 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
MSH6P52701 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC27.34■■□□□ 1.97
MSH6P52701 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC27.34■■□□□ 1.97
MSH6P52701 Z85996.1-201ENST00000494644 937 ntBASIC27.34■■□□□ 1.97
MSH6P52701 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 MIR3652-201ENST00000579335 131 ntBASIC27.34■■□□□ 1.97
MSH6P52701 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC27.34■■□□□ 1.97
MSH6P52701 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC27.34■■□□□ 1.97
MSH6P52701 AC092119.3-201ENST00000612618 583 ntBASIC27.34■■□□□ 1.97
MSH6P52701 AC004263.2-201ENST00000617183 678 ntBASIC27.34■■□□□ 1.97
MSH6P52701 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC27.34■■□□□ 1.97
MSH6P52701 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC27.34■■□□□ 1.97
MSH6P52701 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH6P52701 AL117328.2-201ENST00000624617 1940 ntBASIC27.33■■□□□ 1.97
MSH6P52701 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
MSH6P52701 AP000523.1-201ENST00000398242 1049 ntBASIC27.33■■□□□ 1.97
MSH6P52701 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC27.33■■□□□ 1.97
MSH6P52701 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
MSH6P52701 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
MSH6P52701 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
MSH6P52701 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
MSH6P52701 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
MSH6P52701 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC27.33■■□□□ 1.97
MSH6P52701 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH6P52701 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH6P52701 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC27.33■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms