Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.41■□□□□ 0.22
ATF4P18848 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ATF4P18848 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 AC027702.1-201ENST00000563810 1770 ntBASIC16.41■□□□□ 0.22
ATF4P18848 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 UNC93B3-201ENST00000308076 687 ntBASIC16.41■□□□□ 0.22
ATF4P18848 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
ATF4P18848 AC068418.2-201ENST00000577309 3703 ntBASIC16.41■□□□□ 0.22
ATF4P18848 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATF4P18848 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.41■□□□□ 0.22
ATF4P18848 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ATF4P18848 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ATF4P18848 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC16.4■□□□□ 0.22
ATF4P18848 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
ATF4P18848 AC142381.2-201ENST00000566120 298 ntBASIC16.4■□□□□ 0.22
ATF4P18848 MIR3181-201ENST00000578512 73 ntBASIC16.4■□□□□ 0.22
ATF4P18848 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.4■□□□□ 0.22
ATF4P18848 AL136162.1-201ENST00000607711 1078 ntBASIC16.4■□□□□ 0.22
ATF4P18848 AL355001.2-201ENST00000620617 1191 ntBASIC16.4■□□□□ 0.22
ATF4P18848 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ATF4P18848 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.4■□□□□ 0.22
ATF4P18848 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.4■□□□□ 0.22
ATF4P18848 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ATF4P18848 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATF4P18848 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
ATF4P18848 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
ATF4P18848 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.39■□□□□ 0.21
ATF4P18848 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.39■□□□□ 0.21
ATF4P18848 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.39■□□□□ 0.21
ATF4P18848 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ATF4P18848 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 OR2I1P-207ENST00000453522 948 ntBASIC16.39■□□□□ 0.21
ATF4P18848 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
ATF4P18848 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.39■□□□□ 0.21
ATF4P18848 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.39■□□□□ 0.21
ATF4P18848 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.39■□□□□ 0.21
ATF4P18848 AC099778.1-201ENST00000568593 1911 ntBASIC16.39■□□□□ 0.21
ATF4P18848 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ATF4P18848 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC16.38■□□□□ 0.21
ATF4P18848 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.38■□□□□ 0.21
ATF4P18848 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.38■□□□□ 0.21
ATF4P18848 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
ATF4P18848 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
ATF4P18848 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.38■□□□□ 0.21
ATF4P18848 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
ATF4P18848 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
ATF4P18848 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.38■□□□□ 0.21
ATF4P18848 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ATF4P18848 SUDS3P1-201ENST00000505831 966 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms