Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPS7P12-201ENST00000422385 582 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 MED28P4-201ENST00000433137 572 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 CHCHD4P5-201ENST00000436684 427 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC068491.1-201ENST00000449539 1241 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC092824.1-201ENST00000483524 576 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 RPL7P41-201ENST00000485823 957 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 EIF1P7-201ENST00000487533 337 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC105420.1-201ENST00000504389 582 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 MRPS33P3-201ENST00000513456 322 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 IGKV2D-38-201ENST00000518423 240 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 IGHV3-57-201ENST00000520143 280 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 HNRNPRP2-201ENST00000528421 743 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 RN7SL131P-201ENST00000579043 256 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC024941.1-201ENST00000612250 334 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC073530.2-201ENST00000623987 261 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC244258.1-201ENST00000637553 1071 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 AC078880.4-201ENST00000617627 1749 ntBASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
CCDC39Q9UFE4 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 MTCO1P25-201ENST00000414449 1799 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC099786.3-201ENST00000565735 1410 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 NUDT19P3-201ENST00000404698 555 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL451061.1-201ENST00000407887 862 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL606495.1-201ENST00000422100 813 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 PTP4A1P7-201ENST00000423476 514 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC097721.1-201ENST00000427150 1253 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC090018.1-201ENST00000434369 367 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 BX679664.2-201ENST00000439282 283 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC093899.1-201ENST00000457984 376 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RPL7AP23-201ENST00000482625 776 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC105391.1-201ENST00000503155 1045 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SNORA3.4-201ENST00000515969 96 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RNU6-1178P-201ENST00000516674 107 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SNORA76.2-201ENST00000517095 137 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC060788.1-201ENST00000521318 469 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RBMS2P1-201ENST00000525031 1226 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SNRPCP6-201ENST00000528310 210 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC044839.3-201ENST00000532068 860 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 ACER3-213ENST00000533873 929 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 OSBPL9P3-201ENST00000534523 595 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC106785.4-201ENST00000569492 412 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC027455.1-201ENST00000574104 594 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AC073333.2-201ENST00000603589 769 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 AF250324.2-201ENST00000608299 610 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 VIS1.1-201ENST00000610517 203 ntBASIC7.56□□□□□ -1.2
CCDC39Q9UFE4 PTCHD3P1-201ENST00000612350 537 ntBASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms