Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC083837.1-201ENST00000565297 2994 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC239868.2-201ENST00000564237 4527 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC068870.1-201ENST00000563737 2455 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC020656.2-201ENST00000613291 5309 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC093297.3-201ENST00000607056 2517 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 OR7E25P-201ENST00000344844 931 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 OR7E156P-201ENST00000400303 464 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 RPS6P23-201ENST00000413224 722 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 CDY8P-201ENST00000428380 1279 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 CDY20P-201ENST00000447528 1279 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC092121.1-201ENST00000569452 202 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 AC015802.2-201ENST00000589690 189 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 LSM1P2-201ENST00000604911 322 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 RN7SL544P-201ENST00000617232 284 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 RN7SL763P-201ENST00000620922 284 ntBASIC5.65□□□□□ -1.5
TREX1Q9NSU2 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.65□□□□□ -1.51
TREX1Q9NSU2 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TREX1Q9NSU2 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TREX1Q9NSU2 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC018809.2-201ENST00000602436 3823 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC018628.1-201ENST00000624147 3819 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC099535.1-201ENST00000408928 371 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC245060.4-201ENST00000413293 1121 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 HMGB3P24-201ENST00000433260 622 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 REG1CP-206ENST00000447469 496 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ACA64.1-201ENST00000459171 127 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 RN7SL649P-201ENST00000496974 275 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 SNORA70.20-201ENST00000516848 126 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 MRPS16P1-201ENST00000523462 412 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 PMS2P3-207ENST00000529061 717 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 TOMM20P1-201ENST00000534518 427 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AP000619.2-201ENST00000546014 969 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC009237.13-201ENST00000603193 276 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AC067773.1-201ENST00000603284 1094 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 AL499605.1-201ENST00000604628 403 ntBASIC5.64□□□□□ -1.51
TREX1Q9NSU2 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
TREX1Q9NSU2 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 ICE2P1-201ENST00000512800 1849 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 REREP1Y-201ENST00000422655 198 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.63□□□□□ -1.51
TREX1Q9NSU2 REREP2Y-201ENST00000439103 200 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 DNAJA1P5-201ENST00000440278 943 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 AC023271.1-201ENST00000445936 1090 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 AP006222.1-205ENST00000450734 457 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 NXT1P1-201ENST00000458481 316 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 AC011476.1-201ENST00000466725 307 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 RN7SL197P-201ENST00000466981 299 ntBASIC5.63□□□□□ -1.51
TREX1Q9NSU2 RN7SL741P-201ENST00000482473 289 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms