Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 TTC39DP-201ENST00000416781 1688 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 RNA5SP65-201ENST00000363166 119 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 Y_RNA.303-201ENST00000364998 94 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 MIR548F1-201ENST00000408667 84 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC010385.1-201ENST00000412374 256 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 MTND4LP17-201ENST00000414607 293 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 MTCYBP38-201ENST00000417160 1123 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 BTF3P9-201ENST00000418784 283 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 RPS27AP7-201ENST00000422792 455 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 IPMKP1-201ENST00000425988 855 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 VN1R54P-201ENST00000435210 1049 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC009237.4-201ENST00000441078 238 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC093392.2-201ENST00000450682 337 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 CFTRP1-201ENST00000456646 183 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 BX323845.2-201ENST00000458382 234 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 MTCO3P38-201ENST00000468910 766 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC126182.1-201ENST00000478134 357 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC138853.1-201ENST00000503549 823 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 C4orf22-205ENST00000508675 753 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC114801.1-201ENST00000512633 297 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 SNORA31.13-201ENST00000516624 135 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC013701.1-201ENST00000522657 465 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC022239.1-201ENST00000527922 435 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 GSTM3-206ENST00000540225 678 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 ADI1P3-201ENST00000549509 470 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC018714.1-201ENST00000605028 208 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC078909.2-201ENST00000620584 398 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC008443.7-201ENST00000622195 246 ntBASIC6.9□□□□□ -1.3
SSU72Q9NP77 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
SSU72Q9NP77 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SSU72Q9NP77 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.31
SSU72Q9NP77 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.9□□□□□ -1.31
SSU72Q9NP77 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.9□□□□□ -1.31
SSU72Q9NP77 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
SSU72Q9NP77 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.9□□□□□ -1.31
SSU72Q9NP77 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 AP003175.1-201ENST00000641383 6658 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SSU72Q9NP77 RNA5SP483-201ENST00000363431 118 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 Y_RNA.390-201ENST00000383932 102 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 SNORA75-201ENST00000384158 137 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 IGHV1-24-201ENST00000390610 411 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
SSU72Q9NP77 DNAJC19P6-201ENST00000401853 280 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 RPS3AP24-201ENST00000407896 734 ntBASIC6.89□□□□□ -1.31
SSU72Q9NP77 RNU4-64P-201ENST00000410795 131 ntBASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms