Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 OR5D2P-201ENST00000524390 911 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC051619.2-201ENST00000559063 397 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 MIR4443-201ENST00000585052 53 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC119403.2-201ENST00000590960 598 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC013244.1-201ENST00000604279 193 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC104695.2-201ENST00000605056 775 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 uc_338.26-201ENST00000612659 160 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC107905.1-201ENST00000616204 426 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AP003789.1-201ENST00000617737 605 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC243960.7-201ENST00000623532 707 ntBASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC3Q9BQI4 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 DPY19L1P1-201ENST00000417811 2594 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC090220.1-201ENST00000593078 1699 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 RNA5SP46-201ENST00000362370 120 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 MRPL53P1-201ENST00000414323 319 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 BMS1P13-201ENST00000417301 885 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 BRWD1P3-201ENST00000428816 390 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 ACA64.4-201ENST00000459070 127 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 RN7SL466P-201ENST00000497546 295 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 CYP4F27P-201ENST00000514557 494 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 IGKV2-19-201ENST00000518132 283 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 EIF1AXP2-201ENST00000555940 413 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 MIR4505-201ENST00000582238 73 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 FO393422.1-201ENST00000603908 708 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AL713998.2-201ENST00000604538 1198 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC004890.3-201ENST00000605566 1095 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC100814.1-201ENST00000606963 623 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AP000864.1-201ENST00000609424 650 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 AC087565.3-203ENST00000641018 837 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
CCDC3Q9BQI4 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 MTCO1P22-201ENST00000604619 1360 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 RNA5SP394-201ENST00000364216 119 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 PTCD2P2-201ENST00000415579 1095 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AL731534.1-201ENST00000434711 269 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AL590399.4-201ENST00000436561 601 ntBASIC5.72□□□□□ -1.49
CCDC3Q9BQI4 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms