Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 RNU6-670P-201ENST00000364312 104 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 RN7SKP186-201ENST00000365371 303 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 MIR188-201ENST00000385034 86 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 RBBP4P5-201ENST00000398583 1266 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 RNA5SP156-201ENST00000410250 110 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 NMD3P2-201ENST00000421815 761 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC115283.1-201ENST00000427353 400 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC108479.1-201ENST00000431142 427 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 OR3D1P-201ENST00000438288 955 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL645936.1-201ENST00000441979 518 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 CTSLP6-201ENST00000458273 1002 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AP002453.1-201ENST00000492327 668 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 RN7SL362P-201ENST00000494228 267 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 RN7SL284P-201ENST00000498823 275 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 ATG10-AS1-201ENST00000504846 648 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC095052.1-201ENST00000509955 863 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 SNORA74.1-201ENST00000516320 180 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 RNA5SP434-201ENST00000516647 121 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC084121.1-201ENST00000533882 835 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC090424.1-201ENST00000535243 736 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 NPM1P5-201ENST00000557228 838 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 FAM60CP-201ENST00000591086 664 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC073333.2-201ENST00000603589 769 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL591926.1-201ENST00000620542 217 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 OR51C1P-202ENST00000641159 1444 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.13□□□□□ -1.59
NKX3-1Q99801 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
NKX3-1Q99801 CASC19-260ENST00000641828 2001 ntBASIC5.13□□□□□ -1.59
NKX3-1Q99801 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 MFSD8-219ENST00000641228 2559 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 RNU6-819P-201ENST00000364116 107 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 RNU105B-201ENST00000364478 208 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 YWHAZP6-201ENST00000399764 738 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 RN7SKP166-201ENST00000410812 305 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 RN7SKP144-201ENST00000411108 279 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 RCC2P2-201ENST00000422174 918 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 GAPDHP59-201ENST00000435908 267 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 RPS12P17-201ENST00000438591 377 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 KRT8P51-201ENST00000438938 274 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC016027.4-201ENST00000450866 277 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 C1DP3-201ENST00000455013 423 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 OSTCP1-201ENST00000455507 450 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AL603882.1-201ENST00000463059 681 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AL049829.1-201ENST00000465411 156 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 SNX18P25-201ENST00000510539 758 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 KHDC1P1-201ENST00000511053 508 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 ZNF519P4-201ENST00000514008 125 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 snoU109.5-201ENST00000516231 132 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC104997.1-201ENST00000519761 717 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC078899.1-201ENST00000521432 1185 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC107958.1-201ENST00000556576 290 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 MIR4433B-201ENST00000581329 102 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 462.4 ms