Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AL137246.1-201ENST00000607072 977 ntBASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC093388.1-201ENST00000609166 430 ntBASIC5.8□□□□□ -1.48
VPS35Q96QK1 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 OR11H2-202ENST00000641517 1085 ntBASIC5.8□□□□□ -1.48
VPS35Q96QK1 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS35Q96QK1 AC022164.1-201ENST00000568767 2673 ntBASIC5.8□□□□□ -1.48
VPS35Q96QK1 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 RN7SKP15-201ENST00000364742 309 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 GNG5P2-201ENST00000372054 207 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 LYPLA1P3-201ENST00000402650 695 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 RPS3AP2-201ENST00000407190 754 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 RN7SKP29-201ENST00000410957 272 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 BX323845.3-201ENST00000428215 527 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 KCTD9P1-201ENST00000430462 1167 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC126120.1-201ENST00000431082 470 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AP006222.1-205ENST00000450734 457 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC144530.1-201ENST00000452862 555 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC093166.4-201ENST00000457867 318 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 RNU1-88P-201ENST00000459274 128 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC079080.1-201ENST00000479841 822 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 USP9YP2-201ENST00000504503 1000 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC006499.4-201ENST00000510947 694 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 USP9YP1-201ENST00000513521 1002 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 RNU6-1334P-201ENST00000516032 105 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 snoU109.5-201ENST00000516231 132 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 MIR4260-201ENST00000583107 67 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 FAM27E4-201ENST00000605259 342 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR8G3P-202ENST00000641572 1255 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 AL161756.3-201ENST00000641216 2071 ntBASIC5.79□□□□□ -1.48
VPS35Q96QK1 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS35Q96QK1 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS35Q96QK1 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 FBXL21-201ENST00000297158 1305 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 OR52B3P-201ENST00000314715 928 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC019205.1-201ENST00000421830 730 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC079807.1-201ENST00000429993 481 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 RPS3AP38-201ENST00000435889 763 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS35Q96QK1 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC112184.1-201ENST00000505179 312 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC097486.1-201ENST00000515331 210 ntBASIC5.78□□□□□ -1.48
VPS35Q96QK1 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms