Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AL513327.3-201ENST00000602618 469 ntBASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 RNA5SP439-201ENST00000617595 124 ntBASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 AC127024.6-201ENST00000621598 424 ntBASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 AC026124.2-201ENST00000621847 656 ntBASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
C9orf40Q8IXQ3 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC064862.4-201ENST00000442180 334 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AL161636.2-201ENST00000445179 927 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RPL12P39-201ENST00000455456 496 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RPS23P2-201ENST00000463671 415 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RPS3AP15-201ENST00000483874 781 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RNU6-615P-201ENST00000516065 106 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 HSPE1P2-201ENST00000554777 306 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC010547.6-201ENST00000571789 193 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AP001542.1-201ENST00000591314 200 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC063977.5-201ENST00000601044 974 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AL133481.2-203ENST00000607558 139 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AP003072.5-201ENST00000623872 773 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC063952.1-203ENST00000634410 658 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 AC140134.1-201ENST00000511830 3544 ntBASIC5.3□□□□□ -1.56
C9orf40Q8IXQ3 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AL049634.1-201ENST00000453770 1720 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 RNA5SP30-201ENST00000365552 115 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 RNA5SP122-201ENST00000384457 108 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 U3.23-201ENST00000391132 200 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 SNORA17A-201ENST00000391185 133 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 NENFP1-201ENST00000419476 466 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 RPL34P3-201ENST00000421454 338 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 MRPS21P2-201ENST00000424704 264 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AL662874.1-201ENST00000426065 230 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 VN1R21P-201ENST00000426703 765 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 RPL12P16-201ENST00000431098 498 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 LRRC37A14P-201ENST00000452297 462 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC016724.1-201ENST00000453215 421 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 SETP20-201ENST00000457046 852 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 NXT1P1-201ENST00000458481 316 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 SNORA43.3-201ENST00000517240 103 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC112191.2-201ENST00000522428 333 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 IGKV3D-34-201ENST00000522638 302 ntBASIC5.29□□□□□ -1.56
C9orf40Q8IXQ3 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms