Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC106730.2-201ENST00000566641 540 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC107993.1-201ENST00000591343 684 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC011445.2-201ENST00000599274 173 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 AC092266.1-201ENST00000610958 165 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 FAM27E2-201ENST00000619668 403 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 AP003476.1-201ENST00000623984 516 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AL359694.2-201ENST00000567753 1615 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.49□□□□□ -1.37
USP39Q53GS9 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 EIF3EP1-201ENST00000433978 1316 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.49□□□□□ -1.37
USP39Q53GS9 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
USP39Q53GS9 AC027575.3-201ENST00000583058 2747 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 AL391261.1-201ENST00000555712 1479 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
USP39Q53GS9 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 SNORD116-8-201ENST00000384365 95 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 MIR7-1-201ENST00000384871 110 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL157702.1-201ENST00000398764 426 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 LRRC37BP1-201ENST00000398851 714 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 OR51B3P-201ENST00000412287 913 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 EEF1B2P8-201ENST00000414101 671 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 RPS3P2-201ENST00000421346 701 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC104843.2-201ENST00000427666 297 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 MTND2P5-201ENST00000432656 1006 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC094019.1-201ENST00000434678 472 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 NPM1P48-201ENST00000436002 853 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AL391987.1-201ENST00000441025 200 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 PPIAP27-201ENST00000453800 265 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AL356390.1-201ENST00000455684 397 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC023194.2-201ENST00000465398 406 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 RN7SL104P-201ENST00000498686 293 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC095052.1-201ENST00000509955 863 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC106872.4-201ENST00000510050 523 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 MTCO3P27-201ENST00000514397 196 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 RN7SKP35-201ENST00000517210 151 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC027667.1-201ENST00000545814 304 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 MRPS21P8-201ENST00000569196 235 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 MIR3614-201ENST00000581261 86 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 OR7A11P-201ENST00000597719 953 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC004477.3-201ENST00000614061 590 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 CYCSP41-201ENST00000616920 296 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.48□□□□□ -1.37
USP39Q53GS9 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC095038.2-201ENST00000621464 1070 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC078883.4-201ENST00000623218 367 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC018692.2-201ENST00000624130 348 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.48□□□□□ -1.37
USP39Q53GS9 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
USP39Q53GS9 AC125238.2-201ENST00000430003 1440 ntBASIC6.48□□□□□ -1.37
USP39Q53GS9 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
USP39Q53GS9 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms