Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
COL4A4P53420 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
COL4A4P53420 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.99□□□□□ -1.45
COL4A4P53420 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC5.99□□□□□ -1.45
COL4A4P53420 JPX-212ENST00000639185 9658 ntTSL 5 BASIC5.99□□□□□ -1.45
COL4A4P53420 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL4A4P53420 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.99□□□□□ -1.45
COL4A4P53420 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 RPS29P22-201ENST00000472363 168 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 AC008897.1-201ENST00000494006 347 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.99□□□□□ -1.45
COL4A4P53420 AC021678.3-201ENST00000517893 476 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.99□□□□□ -1.45
COL4A4P53420 AC078899.1-201ENST00000521432 1185 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 AC006116.3-201ENST00000592968 361 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 AC069307.1-201ENST00000602820 447 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 AL034546.1-201ENST00000623740 3693 ntBASIC5.99□□□□□ -1.45
COL4A4P53420 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL4A4P53420 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL4A4P53420 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL4A4P53420 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.99□□□□□ -1.45
COL4A4P53420 AP002991.2-201ENST00000623807 2801 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 AL133325.1-201ENST00000421090 382 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.98□□□□□ -1.45
COL4A4P53420 AC092324.1-201ENST00000468671 324 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC090114.3-201ENST00000479267 829 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 RN7SL346P-201ENST00000491561 294 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC105233.1-201ENST00000498840 781 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.98□□□□□ -1.45
COL4A4P53420 RNU6-941P-201ENST00000516346 108 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.98□□□□□ -1.45
COL4A4P53420 OR4A6P-201ENST00000534364 970 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL4A4P53420 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 AC007346.2-201ENST00000564816 892 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 NANOGP3-201ENST00000605855 286 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL4A4P53420 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.98□□□□□ -1.45
COL4A4P53420 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL4A4P53420 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 RNU1-149P-201ENST00000390870 161 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC104837.2-201ENST00000427236 424 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.98□□□□□ -1.45
COL4A4P53420 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 AC006463.2-201ENST00000473326 348 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.98□□□□□ -1.45
COL4A4P53420 MIR2117-201ENST00000516780 80 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 RN7SKP99-201ENST00000517028 307 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.98□□□□□ -1.45
COL4A4P53420 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 OR5AZ1P-201ENST00000527448 943 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.98□□□□□ -1.45
COL4A4P53420 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.98□□□□□ -1.45
COL4A4P53420 AL512310.9-201ENST00000553311 948 ntBASIC5.98□□□□□ -1.45
COL4A4P53420 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A4P53420 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
COL4A4P53420 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A4P53420 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A4P53420 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms