Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 AC087888.1-201ENST00000550884 1254 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.02□□□□□ -1.61
CDX1P47902 AC107958.1-201ENST00000556576 290 ntBASIC5.02□□□□□ -1.61
CDX1P47902 OR4H6P-201ENST00000563771 921 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.02□□□□□ -1.61
CDX1P47902 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 uc_338.29-201ENST00000615099 168 ntBASIC5.02□□□□□ -1.61
CDX1P47902 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 AC093849.1-201ENST00000563631 2209 ntBASIC5.02□□□□□ -1.61
CDX1P47902 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.02□□□□□ -1.61
CDX1P47902 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.02□□□□□ -1.61
CDX1P47902 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.01□□□□□ -1.61
CDX1P47902 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
CDX1P47902 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
CDX1P47902 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
CDX1P47902 RN7SKP171-201ENST00000364417 303 ntBASIC5.01□□□□□ -1.61
CDX1P47902 RNU4-7P-201ENST00000364758 141 ntBASIC5.01□□□□□ -1.61
CDX1P47902 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 AL096800.1-201ENST00000405326 893 ntBASIC5.01□□□□□ -1.61
CDX1P47902 RNA5SP198-201ENST00000410376 127 ntBASIC5.01□□□□□ -1.61
CDX1P47902 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 AC006065.1-201ENST00000422539 802 ntBASIC5.01□□□□□ -1.61
CDX1P47902 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 VN1R20P-201ENST00000425215 966 ntBASIC5.01□□□□□ -1.61
CDX1P47902 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 FTLP19-201ENST00000433300 394 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 EMC3-AS1-205ENST00000438698 534 ntBASIC5.01□□□□□ -1.61
CDX1P47902 KRT8P51-201ENST00000438938 274 ntBASIC5.01□□□□□ -1.61
CDX1P47902 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 RPS15AP29-201ENST00000445539 400 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.01□□□□□ -1.61
CDX1P47902 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 MTND5P8-201ENST00000449817 1083 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AC015864.1-201ENST00000496512 544 ntBASIC5.01□□□□□ -1.61
CDX1P47902 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 NPM1P27-201ENST00000502784 830 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC091965.3-201ENST00000506236 208 ntBASIC5.01□□□□□ -1.61
CDX1P47902 RN7SKP70-201ENST00000516655 271 ntBASIC5.01□□□□□ -1.61
CDX1P47902 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 AL358913.1-201ENST00000554342 121 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 AC007342.5-201ENST00000571340 2142 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 MIR3154-201ENST00000577829 84 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AP001496.3-201ENST00000580230 913 ntBASIC5.01□□□□□ -1.61
CDX1P47902 MIR4271-201ENST00000582451 67 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.01□□□□□ -1.61
CDX1P47902 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AC005520.3-201ENST00000602874 370 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AC084373.1-201ENST00000603311 235 ntBASIC5.01□□□□□ -1.61
CDX1P47902 AL157899.1-201ENST00000604110 936 ntBASIC5.01□□□□□ -1.61
CDX1P47902 MIR6806-201ENST00000622141 64 ntBASIC5.01□□□□□ -1.61
CDX1P47902 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.01□□□□□ -1.61
CDX1P47902 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CDX1P47902 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.01□□□□□ -1.61
CDX1P47902 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5□□□□□ -1.61
CDX1P47902 CASC19-281ENST00000642118 1554 ntBASIC5□□□□□ -1.61
CDX1P47902 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
CDX1P47902 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC5□□□□□ -1.61
CDX1P47902 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CDX1P47902 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CDX1P47902 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5□□□□□ -1.61
CDX1P47902 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5□□□□□ -1.61
CDX1P47902 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5□□□□□ -1.61
CDX1P47902 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5□□□□□ -1.61
CDX1P47902 AC107977.1-201ENST00000355745 939 ntBASIC5□□□□□ -1.61
CDX1P47902 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms