Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 CLEC1A-201ENST00000315330 2685 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 ZNF701-201ENST00000301093 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 AC079466.1-201ENST00000587961 4453 ntTSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 BCO2-201ENST00000357685 2930 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 OAS2-207ENST00000620097 2908 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 ADGRE3-201ENST00000253673 2254 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 DDX11-202ENST00000350437 3724 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 AKAP2-201ENST00000259318 3101 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 NRXN3-215ENST00000557594 3381 ntTSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 WWC1-209ENST00000521089 3562 ntAPPRIS ALT1 TSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR51D1-202ENST00000641817 3561 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR10A3-201ENST00000360759 1061 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
COL9A1P20849 RNU6-223P-201ENST00000362830 107 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RNA5SP435-201ENST00000364044 108 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 SNORA63.7-201ENST00000365579 123 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 SNORD116-29-201ENST00000384516 83 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 ISY1-202ENST00000393292 988 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 CCNYL3-201ENST00000407030 998 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RN7SKP146-201ENST00000410242 334 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 AC019181.1-201ENST00000417151 310 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RPA2P2-201ENST00000419698 796 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 DPY19L1P2-201ENST00000426647 915 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC009362.1-201ENST00000427253 406 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AL606489.2-201ENST00000433886 234 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 GRM8-206ENST00000444921 1251 ntTSL 3 BASIC8.37□□□□□ -1.07
COL9A1P20849 AC022080.2-201ENST00000452932 533 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC007000.1-201ENST00000453064 794 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RPL37P23-201ENST00000492641 294 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC8.37□□□□□ -1.07
COL9A1P20849 GUSBP3-201ENST00000509348 423 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC011411.1-201ENST00000509592 876 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC114797.1-201ENST00000514003 728 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 SCARNA11.1-201ENST00000516918 132 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RNU6-789P-201ENST00000517105 102 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR4C1P-201ENST00000530880 937 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC8.37□□□□□ -1.07
COL9A1P20849 AC089998.3-201ENST00000549715 493 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC138915.2-201ENST00000569776 97 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR1P1-201ENST00000571766 994 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
COL9A1P20849 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC8.37□□□□□ -1.07
COL9A1P20849 AC008966.2-201ENST00000606157 453 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 AC078899.5-201ENST00000612475 178 ntBASIC8.37□□□□□ -1.07
COL9A1P20849 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 LINC01139-201ENST00000400946 1537 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 MPP7-203ENST00000375732 5063 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 ZNF726-201ENST00000322487 2330 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 NCOA4-201ENST00000578454 2307 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 FAM126A-202ENST00000409923 3130 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 RAB3GAP1-203ENST00000442034 4185 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 CYB5B-202ENST00000512062 4358 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 COL4A6-201ENST00000334504 6700 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 MGC27382-202ENST00000436742 1993 ntTSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 OR2T10-202ENST00000642090 3519 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
COL9A1P20849 FAM111A-202ENST00000420244 3780 ntAPPRIS P1 TSL 3 BASIC8.37□□□□□ -1.07
COL9A1P20849 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC8.37□□□□□ -1.07
COL9A1P20849 MAMDC2-AS1-204ENST00000448377 1923 ntTSL 5 BASIC8.37□□□□□ -1.07
COL9A1P20849 HIVEP3-201ENST00000372583 12193 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 SGK1-201ENST00000237305 2401 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
COL9A1P20849 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 FBXO38-201ENST00000296701 3680 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 MOSPD1-203ENST00000370783 2364 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 TAB3P1-202ENST00000452645 1634 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 LINC00927-203ENST00000558913 2878 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 DAB2-201ENST00000320816 4534 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 SPATA2P1-201ENST00000431223 2055 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 SPIN4-201ENST00000374884 4117 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
COL9A1P20849 AC073343.1-201ENST00000328239 651 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 FAM32BP-201ENST00000344033 333 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 Y_RNA.47-201ENST00000362697 108 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AL672167.2-201ENST00000377164 879 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 CUBN-201ENST00000377823 705 ntTSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 TRBV5-3-201ENST00000390362 343 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
COL9A1P20849 RNY4P36-201ENST00000391116 96 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC8.36□□□□□ -1.07
COL9A1P20849 RNU2-8P-201ENST00000410727 190 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AL450992.3-201ENST00000413192 568 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC009302.1-201ENST00000417147 390 ntBASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms