Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.49□□□□□ -1.21
HMGB1P09429 AC013701.1-201ENST00000522657 465 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 OR8K2P-201ENST00000524645 927 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC7.49□□□□□ -1.21
HMGB1P09429 BTG1P1-201ENST00000540396 508 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 TDGP1-201ENST00000543961 1229 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 AC018552.3-201ENST00000567416 561 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 MIR3157-201ENST00000578688 85 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 RN7SL475P-201ENST00000583379 298 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 AC021422.1-201ENST00000621212 473 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 TMEM30CP-203ENST00000637814 1035 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 ZNF90P1-201ENST00000480493 1951 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC7.49□□□□□ -1.21
HMGB1P09429 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC7.48□□□□□ -1.21
HMGB1P09429 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.48□□□□□ -1.21
HMGB1P09429 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
HMGB1P09429 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 LCN1P2-201ENST00000372030 223 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 MIR433-201ENST00000384837 93 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 TMA16P2-201ENST00000413187 601 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 MTCO3P4-201ENST00000419236 787 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 RPS17P17-201ENST00000419392 409 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 AC002127.1-201ENST00000421305 225 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC7.48□□□□□ -1.21
HMGB1P09429 RPEP4-201ENST00000437636 602 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 MTND2P30-201ENST00000456663 382 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 NFU1-207ENST00000462320 558 ntTSL 4 BASIC7.48□□□□□ -1.21
HMGB1P09429 RPL5P22-201ENST00000480199 884 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 KHDC1P1-201ENST00000511053 508 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 GAPDHP62-201ENST00000515313 990 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 RNU2-45P-201ENST00000516068 187 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC7.48□□□□□ -1.21
HMGB1P09429 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC7.48□□□□□ -1.21
HMGB1P09429 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC7.48□□□□□ -1.21
HMGB1P09429 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 AL109741.3-201ENST00000561748 592 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 AC007159.1-201ENST00000566529 4706 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 MIR212-201ENST00000586026 110 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC7.48□□□□□ -1.21
HMGB1P09429 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC7.48□□□□□ -1.21
HMGB1P09429 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC7.48□□□□□ -1.21
HMGB1P09429 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.48□□□□□ -1.21
HMGB1P09429 MIR6885-201ENST00000612241 66 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 AC010435.1-201ENST00000623353 1177 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC7.48□□□□□ -1.21
HMGB1P09429 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HMGB1P09429 DDX18P4-201ENST00000511690 1966 ntBASIC7.48□□□□□ -1.21
HMGB1P09429 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
HMGB1P09429 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 AC011504.1-201ENST00000623331 4103 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 AC096656.1-201ENST00000623826 1364 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
HMGB1P09429 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
HMGB1P09429 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 AL034370.1-201ENST00000397254 1590 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC7.47□□□□□ -1.21
HMGB1P09429 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.47□□□□□ -1.21
HMGB1P09429 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
HMGB1P09429 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
HMGB1P09429 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC7.47□□□□□ -1.21
HMGB1P09429 RN7SKP237-201ENST00000364663 301 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 RNA5SP485-201ENST00000365053 119 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 MIR551B-201ENST00000384984 96 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC7.47□□□□□ -1.21
HMGB1P09429 AL512430.2-201ENST00000406786 339 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 RN7SKP129-201ENST00000410288 299 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 AL158827.1-201ENST00000416300 391 ntBASIC7.47□□□□□ -1.21
HMGB1P09429 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.47□□□□□ -1.21
HMGB1P09429 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.47□□□□□ -1.21
HMGB1P09429 AL035458.1-201ENST00000433096 585 ntBASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms