Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC107304.1-201ENST00000604229 296 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AP002345.2-201ENST00000609961 904 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AL137000.1-201ENST00000610528 1244 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC015819.1-201ENST00000613588 663 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AL035661.1-201ENST00000620459 1144 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC073488.2-201ENST00000631903 751 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 DDX18P6-201ENST00000450119 1997 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AC096656.1-201ENST00000623826 1364 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 SPATA2P1-201ENST00000431223 2055 ntBASIC5.63□□□□□ -1.51
HOXA3O43365 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
HOXA3O43365 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC5.63□□□□□ -1.51
HOXA3O43365 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
HOXA3O43365 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.63□□□□□ -1.51
HOXA3O43365 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC010401.2-201ENST00000575137 4934 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
HOXA3O43365 RNU6-1017P-201ENST00000363613 106 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 Y_RNA.192-201ENST00000363977 102 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 RN7SKP107-201ENST00000364157 290 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AL672167.2-201ENST00000377164 879 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 SNORD94-201ENST00000386037 137 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 RPL24P7-201ENST00000399435 453 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 SUMO2P13-201ENST00000403109 272 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 HMGB3P18-201ENST00000406327 590 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AL353133.1-201ENST00000407695 401 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC027644.1-201ENST00000419595 298 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 OR5W1P-201ENST00000423705 938 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC093084.1-201ENST00000424233 687 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC000089.1-201ENST00000424559 801 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 HSPE1P16-201ENST00000426640 348 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 GAPDHP34-201ENST00000432112 823 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC5.62□□□□□ -1.51
HOXA3O43365 MTCYBP34-201ENST00000439552 670 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AL354714.5-201ENST00000450131 590 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 NDUFA12P1-201ENST00000455914 406 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 RPL34P34-201ENST00000465389 354 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AP003385.3-201ENST00000472498 287 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC104689.1-201ENST00000473356 768 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC066616.1-201ENST00000486795 413 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC5.62□□□□□ -1.51
HOXA3O43365 CDH12P2-201ENST00000504393 298 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC021146.8-201ENST00000507455 733 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HOXA3O43365 AC093755.1-201ENST00000512950 1023 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 MTATP6P1-201ENST00000514057 681 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC5.62□□□□□ -1.51
HOXA3O43365 AC120036.3-201ENST00000517826 292 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 MTND1P5-201ENST00000517906 940 ntBASIC5.62□□□□□ -1.51
HOXA3O43365 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.62□□□□□ -1.51
HOXA3O43365 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms