Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AL163952.1-202ENST00000569625 600 ntBASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC068790.4-201ENST00000602474 263 ntBASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 OR9K1P-202ENST00000641111 3217 ntBASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 DOCK11P1-201ENST00000553480 5932 ntBASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
SHANK3Q9BYB0 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 SNORD8-201ENST00000363915 110 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 SNORA67-201ENST00000384423 137 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 MIR551A-201ENST00000385042 96 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 RNU6ATAC21P-201ENST00000408656 126 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 BRD9P1-201ENST00000529855 560 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AP000769.2-201ENST00000602344 396 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AL121886.1-201ENST00000358609 435 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 RNA5SP479-201ENST00000364858 117 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC008171.1-201ENST00000395058 200 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AL360271.1-201ENST00000395679 510 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 EI24P4-201ENST00000423683 1078 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 RPL12P39-201ENST00000455456 496 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 RPS7P6-201ENST00000485777 579 ntBASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
SHANK3Q9BYB0 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 AC009831.5-201ENST00000624000 3189 ntBASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 SNORA62-201ENST00000365493 153 ntBASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 AK3P5-201ENST00000432033 519 ntBASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 HMGB1P40-201ENST00000525121 540 ntBASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
SHANK3Q9BYB0 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
SHANK3Q9BYB0 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms