Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 AC019072.1-201ENST00000604535 1551 ntBASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 AL080312.2-201ENST00000613001 630 ntBASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 AC010809.3-201ENST00000621310 641 ntBASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 AC073488.6-201ENST00000632293 754 ntBASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 GVINP1-202ENST00000531871 7271 ntBASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
CCDC28BQ9BUN5 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL078621.3-201ENST00000623707 2042 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 LINC01613-201ENST00000561476 2780 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 RPL35AP3-201ENST00000414680 288 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL133482.1-201ENST00000415988 498 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 ARMC4P1-201ENST00000438905 707 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL359265.1-201ENST00000440296 795 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL031681.1-201ENST00000443304 400 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC099670.1-201ENST00000455141 783 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC063955.1-201ENST00000462872 685 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL157777.1-201ENST00000468100 304 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 RPL5P22-201ENST00000480199 884 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC005017.1-201ENST00000482002 490 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL049874.2-201ENST00000492636 288 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL390726.5-202ENST00000564800 256 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 IGKV2OR2-7-201ENST00000604652 304 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL139124.1-201ENST00000609123 421 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC010632.3-201ENST00000611377 369 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 GAPDHP41-201ENST00000613707 975 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL139099.4-201ENST00000614802 114 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 FRG1EP-201ENST00000634469 770 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC006206.1-201ENST00000544842 3387 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 PROS2P-201ENST00000474651 1951 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 AC007996.1-201ENST00000620414 2821 ntBASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC28BQ9BUN5 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC073136.1-201ENST00000449426 2884 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC092681.1-201ENST00000297369 291 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 SELENOWP1-201ENST00000322792 252 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 RNA5SP110-201ENST00000362638 115 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 RN7SKP77-201ENST00000363261 353 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 ZNF37CP-201ENST00000406795 241 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC096921.1-201ENST00000411661 375 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 RNF10P1-201ENST00000418589 369 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 KIF4CP-201ENST00000422742 1279 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 WDR82P2-201ENST00000444540 928 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC073909.1-201ENST00000447112 999 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AL445466.1-201ENST00000448432 357 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 OR7E116P-201ENST00000448529 957 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 TPT1P1-201ENST00000458495 518 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 RN7SL502P-201ENST00000481857 290 ntBASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC28BQ9BUN5 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms