Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC009090.4-201ENST00000623921 3691 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 PBLD-202ENST00000309049 2165 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 RNF219-201ENST00000282003 3529 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 AL049776.1-201ENST00000624600 2025 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC138207.6-201ENST00000579164 1967 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 AC006511.3-201ENST00000624929 1783 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC6.87□□□□□ -1.31
COL8A1P27658 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 ATP8A2P2-201ENST00000437678 1568 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 NF1P1-201ENST00000604105 2645 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 KCNK2-201ENST00000391894 1491 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC091132.4-201ENST00000587960 2262 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC105760.1-201ENST00000244820 2231 ntTSL 2 BASIC6.87□□□□□ -1.31
COL8A1P27658 NOP14-AS1-207ENST00000515194 3860 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 OR51H1-201ENST00000322059 999 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
COL8A1P27658 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 RNU6-353P-201ENST00000364266 108 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 FCGR3B-202ENST00000367964 2143 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC084880.1-201ENST00000392530 545 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC6.87□□□□□ -1.31
COL8A1P27658 RN7SKP26-201ENST00000410247 293 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 Y_RNA.605-201ENST00000410577 105 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 RN7SKP106-201ENST00000410832 272 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 PIGPP2-201ENST00000411569 458 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 SNRPEP10-201ENST00000420249 274 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC007394.1-201ENST00000421941 531 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 DEFA9P-201ENST00000433042 285 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC092167.1-201ENST00000435466 495 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC073072.2-201ENST00000447425 348 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 OR7A15P-201ENST00000449848 1009 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC022080.2-201ENST00000452932 533 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC021660.1-201ENST00000465006 554 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 RPL30P9-201ENST00000465586 330 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AL117692.1-201ENST00000494283 713 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AC093278.1-201ENST00000494700 600 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 RN7SKP40-201ENST00000517211 242 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 PAICSP4-201ENST00000517543 1253 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 MIR2052HG-204ENST00000523442 550 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 CHCHD3P2-201ENST00000550751 639 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 DNAJC8P1-201ENST00000554535 372 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.87□□□□□ -1.31
COL8A1P27658 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC010542.1-201ENST00000568430 555 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC6.87□□□□□ -1.31
COL8A1P27658 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.87□□□□□ -1.31
COL8A1P27658 SNRPGP17-201ENST00000603780 214 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AP004372.1-201ENST00000604842 844 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 AP001442.1-201ENST00000617755 659 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC6.87□□□□□ -1.31
COL8A1P27658 AL590396.3-201ENST00000636334 300 ntBASIC6.87□□□□□ -1.31
COL8A1P27658 TTLL7-IT1-201ENST00000455929 2921 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 LINC01427-204ENST00000635299 1978 ntTSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 DNAJC5G-202ENST00000402462 1904 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 DUXAP8-204ENST00000447898 4136 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 NECAP1-210ENST00000638237 2517 ntAPPRIS ALT1 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 SERPINA9-202ENST00000337425 1755 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 SELP-202ENST00000367786 2402 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
COL8A1P27658 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 GSG1-203ENST00000396302 1628 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL8A1P27658 THAP12P1-201ENST00000398672 2203 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 C11orf70-201ENST00000434758 2193 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL8A1P27658 HKR1-202ENST00000392153 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 APEX2-201ENST00000374987 3245 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL8A1P27658 PDE1A-203ENST00000409365 2034 ntTSL 5 BASIC6.86□□□□□ -1.31
COL8A1P27658 TARS2P1-201ENST00000506124 2041 ntBASIC6.86□□□□□ -1.31
COL8A1P27658 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms