Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.42□□□□□ -1.54
SDC1P18827 TMEM183AP1-205ENST00000432739 290 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AC007679.3-201ENST00000434035 414 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AMYP1-201ENST00000440059 1023 ntBASIC5.42□□□□□ -1.54
SDC1P18827 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 AC023271.1-201ENST00000445936 1090 ntBASIC5.42□□□□□ -1.54
SDC1P18827 RN7SL197P-201ENST00000466981 299 ntBASIC5.42□□□□□ -1.54
SDC1P18827 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 RN7SL570P-201ENST00000484405 292 ntBASIC5.42□□□□□ -1.54
SDC1P18827 RPL32P33-201ENST00000487023 394 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AL117692.1-201ENST00000494283 713 ntBASIC5.42□□□□□ -1.54
SDC1P18827 LSM3P4-201ENST00000502948 309 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.42□□□□□ -1.54
SDC1P18827 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.42□□□□□ -1.54
SDC1P18827 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.42□□□□□ -1.54
SDC1P18827 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 NPM1P5-201ENST00000557228 838 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.42□□□□□ -1.54
SDC1P18827 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.42□□□□□ -1.54
SDC1P18827 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 MIR4260-201ENST00000583107 67 ntBASIC5.42□□□□□ -1.54
SDC1P18827 COX6CP7-201ENST00000597056 208 ntBASIC5.42□□□□□ -1.54
SDC1P18827 AL359091.2-201ENST00000609303 556 ntBASIC5.42□□□□□ -1.54
SDC1P18827 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 RNA5SP439-201ENST00000617595 124 ntBASIC5.42□□□□□ -1.54
SDC1P18827 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SDC1P18827 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.42□□□□□ -1.54
SDC1P18827 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 BCORP1-203ENST00000513194 5093 ntBASIC5.42□□□□□ -1.54
SDC1P18827 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.42□□□□□ -1.54
SDC1P18827 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 AC068870.1-201ENST00000563737 2455 ntBASIC5.41□□□□□ -1.54
SDC1P18827 OR4F13P-202ENST00000560066 2054 ntBASIC5.41□□□□□ -1.54
SDC1P18827 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 AL034546.1-201ENST00000623740 3693 ntBASIC5.41□□□□□ -1.54
SDC1P18827 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 RNU1-150P-201ENST00000362491 162 ntBASIC5.41□□□□□ -1.54
SDC1P18827 RNA5SP477-201ENST00000362639 119 ntBASIC5.41□□□□□ -1.54
SDC1P18827 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.41□□□□□ -1.54
SDC1P18827 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 LINC02210-201ENST00000444561 288 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 AC068491.1-201ENST00000449539 1241 ntBASIC5.41□□□□□ -1.54
SDC1P18827 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 RPL9P15-201ENST00000491096 532 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AC009120.1-201ENST00000493458 473 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 Y_RNA.667-201ENST00000516212 107 ntBASIC5.41□□□□□ -1.54
SDC1P18827 RNA5SP438-201ENST00000516561 112 ntBASIC5.41□□□□□ -1.54
SDC1P18827 RN7SKP183-201ENST00000517169 324 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SDC1P18827 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 LINC00556-201ENST00000569603 412 ntBASIC5.41□□□□□ -1.54
SDC1P18827 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.41□□□□□ -1.54
SDC1P18827 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.41□□□□□ -1.54
SDC1P18827 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 FAM27E4-201ENST00000605259 342 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AC097641.3-201ENST00000613523 464 ntBASIC5.41□□□□□ -1.54
SDC1P18827 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.41□□□□□ -1.54
SDC1P18827 AC138627.1-204ENST00000641894 765 ntBASIC5.41□□□□□ -1.54
SDC1P18827 AC006206.1-201ENST00000544842 3387 ntBASIC5.41□□□□□ -1.54
SDC1P18827 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.41□□□□□ -1.54
SDC1P18827 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SDC1P18827 AC007938.2-201ENST00000604666 2634 ntBASIC5.41□□□□□ -1.54
SDC1P18827 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.41□□□□□ -1.54
SDC1P18827 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 AC018628.1-201ENST00000624147 3819 ntBASIC5.4□□□□□ -1.54
SDC1P18827 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms