Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 CCAT2-201ENST00000630920 1752 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC110792.3-201ENST00000595906 1614 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 AL513185.3-201ENST00000433335 1300 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 NACA-203ENST00000454682 6629 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC010401.2-201ENST00000575137 4934 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 MTND5P23-201ENST00000430812 1655 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 AL024507.1-201ENST00000412741 274 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 TMA16P2-201ENST00000413187 601 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC7.04□□□□□ -1.28
COL6A1P12109 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 MTCO2P21-201ENST00000419780 677 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC092570.3-201ENST00000420113 693 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC007394.1-201ENST00000421941 531 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AL035660.1-201ENST00000422041 222 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 VN1R110P-201ENST00000438988 971 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AL591719.1-201ENST00000444669 744 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC239798.3-201ENST00000454459 408 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC117522.2-201ENST00000510049 657 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 AP006245.2-201ENST00000522004 300 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 OR7E10P-201ENST00000526420 991 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 CKS1BP1-201ENST00000555221 240 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 AC110760.3-201ENST00000598794 467 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AC091057.2-201ENST00000602594 792 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC7.04□□□□□ -1.28
COL6A1P12109 RFPL4AP6-201ENST00000616792 846 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 AL445528.2-201ENST00000620582 470 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 FGG-205ENST00000407946 1636 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.04□□□□□ -1.28
COL6A1P12109 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.04□□□□□ -1.28
COL6A1P12109 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 AL133243.2-201ENST00000610331 1621 ntBASIC7.04□□□□□ -1.28
COL6A1P12109 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL6A1P12109 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.04□□□□□ -1.28
COL6A1P12109 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
COL6A1P12109 MFSD8-213ENST00000641134 1327 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.03□□□□□ -1.28
COL6A1P12109 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL6A1P12109 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL6A1P12109 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC7.03□□□□□ -1.28
COL6A1P12109 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL6A1P12109 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.03□□□□□ -1.28
COL6A1P12109 PCF11-AS1-201ENST00000602322 1516 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL6A1P12109 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL6A1P12109 RNU6-670P-201ENST00000364312 104 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL6A1P12109 AL096711.1-201ENST00000404780 554 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 RN7SKP121-201ENST00000410842 305 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 SEPT7P8-201ENST00000413308 775 ntBASIC7.03□□□□□ -1.28
COL6A1P12109 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms