Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC7.51□□□□□ -1.21
HMGB1P09429 AK6-204ENST00000512561 587 ntTSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC124891.1-201ENST00000536322 519 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC025283.1-201ENST00000572039 734 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.51□□□□□ -1.21
HMGB1P09429 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC010200.2-201ENST00000605098 235 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 AC068726.1-201ENST00000610993 341 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 MIR7159-201ENST00000620587 66 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC7.51□□□□□ -1.21
HMGB1P09429 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.51□□□□□ -1.21
HMGB1P09429 GUCY1B2-204ENST00000531898 1979 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HMGB1P09429 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HMGB1P09429 AC092692.1-201ENST00000623625 2595 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
HMGB1P09429 AC007996.1-201ENST00000620414 2821 ntBASIC7.51□□□□□ -1.21
HMGB1P09429 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC7.5□□□□□ -1.21
HMGB1P09429 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 HMGA1P8-201ENST00000414130 321 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AL357078.2-201ENST00000416486 427 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AL360013.1-201ENST00000419031 858 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.5□□□□□ -1.21
HMGB1P09429 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC007688.1-201ENST00000475592 759 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 RNA5SP418-201ENST00000515951 117 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC008055.1-201ENST00000547032 609 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AC005332.4-201ENST00000592752 579 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AL589863.1-201ENST00000595383 631 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC7.5□□□□□ -1.21
HMGB1P09429 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 AC011815.3-201ENST00000624194 473 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 AP001153.1-201ENST00000641024 338 ntBASIC7.5□□□□□ -1.21
HMGB1P09429 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC7.5□□□□□ -1.21
HMGB1P09429 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
HMGB1P09429 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC7.5□□□□□ -1.21
HMGB1P09429 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 DMD-205ENST00000359836 7339 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
HMGB1P09429 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC7.49□□□□□ -1.21
HMGB1P09429 PEX12P1-201ENST00000400284 1048 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HMGB1P09429 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.49□□□□□ -1.21
HMGB1P09429 EMC3-AS1-205ENST00000438698 534 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC7.49□□□□□ -1.21
HMGB1P09429 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC7.49□□□□□ -1.21
HMGB1P09429 MORF4-201ENST00000447135 971 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 RPL23AP23-201ENST00000452590 471 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 AC103563.5-201ENST00000455643 364 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 RN7SL188P-201ENST00000469842 285 ntBASIC7.49□□□□□ -1.21
HMGB1P09429 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC7.49□□□□□ -1.21
HMGB1P09429 RFPL4AP5-201ENST00000514977 504 ntBASIC7.49□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms