Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.56□□□□□ -1.52
ATG4BQ9Y4P1 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 TMSB4XP2-201ENST00000335179 210 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 BX284632.2-201ENST00000421091 399 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL512605.1-202ENST00000441919 381 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC023141.8-201ENST00000442554 208 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL359955.2-201ENST00000445380 353 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC009963.4-201ENST00000448535 339 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC090568.1-201ENST00000509499 856 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 Y_RNA.667-201ENST00000516212 107 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 RNA5SP438-201ENST00000516561 112 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 RNU4-18P-201ENST00000516751 149 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 KCTD9P6-201ENST00000522306 950 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC025423.2-201ENST00000537570 439 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 NANOGNBP2-201ENST00000544753 553 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC006530.1-201ENST00000555980 571 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 HNRNPCP1-201ENST00000556181 766 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC091078.2-201ENST00000557145 559 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL583832.1-201ENST00000603227 784 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL139099.4-201ENST00000614802 114 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AP001962.1-201ENST00000624114 559 ntBASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
ATG4BQ9Y4P1 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 MFSD8-219ENST00000641228 2559 ntBASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 AC007068.1-201ENST00000396690 844 ntBASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 CBX1P3-201ENST00000413296 527 ntBASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 AL691447.1-201ENST00000419456 387 ntBASIC5.54□□□□□ -1.52
ATG4BQ9Y4P1 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms