Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 RPS4XP5-201ENST00000419038 768 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC073072.2-201ENST00000447425 348 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 CFL1P4-201ENST00000451536 498 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC004129.2-201ENST00000457229 287 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC023245.1-201ENST00000468501 517 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 LSM3P4-201ENST00000502948 309 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 TXNP4-201ENST00000575018 310 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AL136228.1-201ENST00000622221 319 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 CASC19-238ENST00000641523 1558 ntBASIC6.04□□□□□ -1.44
PCDH9Q9HC56 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
PCDH9Q9HC56 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC012078.1-201ENST00000405035 1646 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 RNA5SP433-201ENST00000364491 114 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CXADRP1-201ENST00000398098 1095 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 RPL35AP3-201ENST00000414680 288 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 BX276092.6-201ENST00000430476 250 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 GAPDHP75-201ENST00000433910 943 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC110602.1-201ENST00000437414 318 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC009963.4-201ENST00000448535 339 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 BX276092.8-201ENST00000455722 250 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 RN7SL269P-201ENST00000467795 305 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 RNA5SP340-201ENST00000517132 107 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC007956.1-201ENST00000555623 542 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC067805.1-201ENST00000559344 470 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 GARSP1-201ENST00000570895 719 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC005244.1-201ENST00000582566 339 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC090236.2-201ENST00000587933 1101 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 GMCL1P2-201ENST00000605230 823 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC138473.1-201ENST00000605717 526 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AL136370.1-201ENST00000608166 691 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 CXADRP3-202ENST00000617265 1100 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AL137058.3-201ENST00000624531 3099 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AC114774.1-201ENST00000507410 1770 ntBASIC6.03□□□□□ -1.44
PCDH9Q9HC56 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
PCDH9Q9HC56 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms