Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC062029.1-202ENST00000606164 3651 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 PARP4P2-201ENST00000446672 3326 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC022034.1-201ENST00000512867 2156 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC006600.2-201ENST00000624834 2506 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 RNA5SP500-201ENST00000364486 119 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 MIR143-201ENST00000385300 106 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC016769.2-201ENST00000414815 475 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 LYPLA1P1-201ENST00000434514 622 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 RN7SL629P-201ENST00000489622 285 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 ATP5LP3-201ENST00000514223 304 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC018558.5-201ENST00000565840 952 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 AC239868.2-201ENST00000564237 4527 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 WBP11P1-201ENST00000562560 1931 ntBASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC3Q9BQI4 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 RPS26P39-201ENST00000469206 341 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC098799.1-201ENST00000504752 800 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 RNU4-18P-201ENST00000516751 149 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC027308.1-201ENST00000517993 110 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 OR4A40P-201ENST00000533878 948 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 MIR4489-201ENST00000578869 62 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 MIR3176-201ENST00000582210 90 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC015802.2-201ENST00000589690 189 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AC009120.7-201ENST00000623452 780 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AL353763.1-201ENST00000624467 1628 ntBASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC3Q9BQI4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TEK-202ENST00000406359 3935 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC3Q9BQI4 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms