Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU1-146P-201ENST00000364015 165 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 CDC27P1-201ENST00000445384 715 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 COL12A1-211ENST00000615798 11579 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 SNORA70.4-201ENST00000365509 134 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 SNORA11.2-201ENST00000408318 127 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC007064.3-201ENST00000422608 359 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC007559.1-201ENST00000428736 355 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 MORF4L1P5-201ENST00000433352 961 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 RHOT1P3-201ENST00000436571 331 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 DUTP1-201ENST00000493631 470 ntBASIC5.38□□□□□ -1.55
VPS13AQ96RL7 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 KCNMB3-205ENST00000485523 7246 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS13AQ96RL7 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AL359837.1-201ENST00000381357 287 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AL513533.1-201ENST00000453728 415 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 IGKV1OR22-5-201ENST00000458718 354 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 COX6B1P5-201ENST00000509843 249 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MTND6P2-201ENST00000512226 524 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC007938.2-201ENST00000604666 2634 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MBP-206ENST00000397863 4800 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC013268.3-201ENST00000262716 2324 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 OR9G4-201ENST00000302957 984 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MIR4691-201ENST00000583764 85 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC135068.12-201ENST00000637370 931 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RPL17P36-201ENST00000420302 549 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC007161.1-204ENST00000423039 460 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC026688.1-201ENST00000520639 1168 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 AC008147.3-201ENST00000548666 354 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MIR4444-1-201ENST00000581696 74 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 MIR4444-2-201ENST00000584390 74 ntBASIC5.37□□□□□ -1.55
VPS13AQ96RL7 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC245060.6-201ENST00000624350 8420 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 RN7SKP95-201ENST00000362860 303 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 DPPA3P2-202ENST00000557188 1219 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 AC015660.5-201ENST00000623238 564 ntBASIC5.36□□□□□ -1.55
VPS13AQ96RL7 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 MYH1-201ENST00000226207 6024 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS13AQ96RL7 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms