Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 UGT2B24P-201ENST00000514441 1597 ntBASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PDLIM3Q53GG5 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SHQ1P1-201ENST00000437111 1544 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 RNU6-249P-201ENST00000363016 102 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SNORA74A-201ENST00000364089 198 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SNORA58B-201ENST00000364259 136 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL672167.2-201ENST00000377164 879 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 RNU6-152P-201ENST00000384037 107 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MIR105-2-201ENST00000385083 81 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 GAPDHP15-201ENST00000398586 975 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 OR2W4P-201ENST00000406496 926 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL139039.2-201ENST00000407436 479 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 U3.43-201ENST00000410734 213 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 VN1R31P-201ENST00000417498 730 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MTATP6P11-201ENST00000428071 670 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 RPL23AP19-201ENST00000436229 369 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SEPT14P12-201ENST00000442280 560 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 DNAJC19P5-201ENST00000443295 316 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC009963.3-201ENST00000458090 486 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 RN7SKP34-201ENST00000516142 244 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC104997.1-201ENST00000519761 717 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AP000859.1-201ENST00000525536 307 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC007494.1-201ENST00000562293 760 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL589765.6-201ENST00000601909 549 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC100767.2-201ENST00000604840 693 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC024255.1-201ENST00000614376 102 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL590410.1-201ENST00000617925 333 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AL158062.1-201ENST00000619632 745 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MIR7854-201ENST00000620068 65 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 AC061999.1-201ENST00000624454 177 ntBASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 CREM-203ENST00000344351 1625 ntTSL 2 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.19□□□□□ -1.58
PDLIM3Q53GG5 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms