Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC123769.1-201ENST00000530992 3192 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC093909.5-201ENST00000621839 1799 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC022164.1-201ENST00000568767 2673 ntBASIC6.16□□□□□ -1.42
MSX2P35548 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
MSX2P35548 RNU6-623P-201ENST00000363143 105 ntBASIC6.16□□□□□ -1.42
MSX2P35548 RNU6-1214P-201ENST00000363650 109 ntBASIC6.16□□□□□ -1.42
MSX2P35548 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 RNU6-1242P-201ENST00000391052 103 ntBASIC6.16□□□□□ -1.42
MSX2P35548 RNA5SP474-201ENST00000391234 90 ntBASIC6.16□□□□□ -1.42
MSX2P35548 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 AL359694.1-201ENST00000403247 604 ntBASIC6.16□□□□□ -1.42
MSX2P35548 NACAP7-201ENST00000407371 609 ntBASIC6.16□□□□□ -1.42
MSX2P35548 RNU4-22P-201ENST00000411058 166 ntBASIC6.16□□□□□ -1.42
MSX2P35548 RNA5SP280-201ENST00000411230 115 ntBASIC6.16□□□□□ -1.42
MSX2P35548 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 BTF3L4P1-201ENST00000413813 468 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 TRGV6-201ENST00000417928 299 ntBASIC6.16□□□□□ -1.42
MSX2P35548 GAPDHP69-201ENST00000425504 1008 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC093422.3-201ENST00000428506 305 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 PTGES3P5-201ENST00000455109 434 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC103563.5-201ENST00000455643 364 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 RPL7AP23-201ENST00000482625 776 ntBASIC6.16□□□□□ -1.42
MSX2P35548 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 RPL21P131-201ENST00000497298 483 ntBASIC6.16□□□□□ -1.42
MSX2P35548 GOLGA5P1-201ENST00000507317 980 ntBASIC6.16□□□□□ -1.42
MSX2P35548 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AF213884.2-201ENST00000510417 903 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC093770.1-201ENST00000511559 571 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC093752.1-206ENST00000511823 336 ntBASIC6.16□□□□□ -1.42
MSX2P35548 SCARNA18.2-201ENST00000516882 84 ntBASIC6.16□□□□□ -1.42
MSX2P35548 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC6.16□□□□□ -1.42
MSX2P35548 AC022973.4-201ENST00000524100 917 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC105233.3-201ENST00000531125 744 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AP003717.3-201ENST00000544832 1180 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.16□□□□□ -1.42
MSX2P35548 AC016839.1-201ENST00000578162 867 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC6.16□□□□□ -1.42
MSX2P35548 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC6.16□□□□□ -1.42
MSX2P35548 AC005034.4-201ENST00000603612 899 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AC022106.1-201ENST00000612834 766 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AP000676.3-201ENST00000623299 569 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AL162377.2-201ENST00000624532 337 ntBASIC6.16□□□□□ -1.42
MSX2P35548 AL132640.3-201ENST00000630473 177 ntBASIC6.16□□□□□ -1.42
MSX2P35548 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 AC090897.3-201ENST00000636973 1157 ntBASIC6.16□□□□□ -1.42
MSX2P35548 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.16□□□□□ -1.42
MSX2P35548 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSX2P35548 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.16□□□□□ -1.42
MSX2P35548 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC6.16□□□□□ -1.42
MSX2P35548 AC092070.2-203ENST00000598377 3644 ntBASIC6.16□□□□□ -1.42
MSX2P35548 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 Z83820.1-201ENST00000456978 1499 ntBASIC6.15□□□□□ -1.42
MSX2P35548 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 AL121768.1-201ENST00000613917 2544 ntBASIC6.15□□□□□ -1.42
MSX2P35548 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
MSX2P35548 RNU6-481P-201ENST00000384194 107 ntBASIC6.15□□□□□ -1.42
MSX2P35548 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
MSX2P35548 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSX2P35548 RN7SKP278-201ENST00000410504 342 ntBASIC6.15□□□□□ -1.42
MSX2P35548 Z68694.1-201ENST00000413929 841 ntBASIC6.15□□□□□ -1.42
MSX2P35548 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC6.15□□□□□ -1.42
MSX2P35548 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.15□□□□□ -1.42
MSX2P35548 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC6.15□□□□□ -1.42
MSX2P35548 CYCSP52-201ENST00000422857 310 ntBASIC6.15□□□□□ -1.42
MSX2P35548 SPATA20P1-201ENST00000423089 438 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms