Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC7.51□□□□□ -1.21
HOXC9P31274 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
HOXC9P31274 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.5□□□□□ -1.21
HOXC9P31274 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.5□□□□□ -1.21
HOXC9P31274 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.5□□□□□ -1.21
HOXC9P31274 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.5□□□□□ -1.21
HOXC9P31274 RN7SL329P-201ENST00000467740 299 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 TRBV5-2-201ENST00000489095 273 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 RPL17P2-201ENST00000491913 451 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.5□□□□□ -1.21
HOXC9P31274 AC002456.2-201ENST00000509356 380 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC7.5□□□□□ -1.21
HOXC9P31274 BLZF2P-201ENST00000553776 1130 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 AGGF1P7-201ENST00000562369 913 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.5□□□□□ -1.21
HOXC9P31274 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.5□□□□□ -1.21
HOXC9P31274 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 SAMMSON-209ENST00000641222 1100 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 CASC19-222ENST00000641321 1173 ntBASIC7.5□□□□□ -1.21
HOXC9P31274 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.5□□□□□ -1.21
HOXC9P31274 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
HOXC9P31274 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
HOXC9P31274 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.49□□□□□ -1.21
HOXC9P31274 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.49□□□□□ -1.21
HOXC9P31274 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 WBP11P1-201ENST00000562560 1931 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 RNU6-233P-201ENST00000410845 141 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 METTL15P3-201ENST00000415522 1221 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC7.49□□□□□ -1.21
HOXC9P31274 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 FAR2P1-206ENST00000449736 709 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC7.49□□□□□ -1.21
HOXC9P31274 AL035090.1-201ENST00000454835 332 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 AC078878.1-201ENST00000539832 958 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC7.49□□□□□ -1.21
HOXC9P31274 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC7.49□□□□□ -1.21
HOXC9P31274 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.49□□□□□ -1.21
HOXC9P31274 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.49□□□□□ -1.21
HOXC9P31274 AC024940.4-201ENST00000605507 246 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 AL139407.1-201ENST00000613826 1175 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 RPSAP73-201ENST00000614820 330 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.49□□□□□ -1.21
HOXC9P31274 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.49□□□□□ -1.21
HOXC9P31274 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
HOXC9P31274 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
HOXC9P31274 AC005725.1-201ENST00000577346 2607 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.48□□□□□ -1.21
HOXC9P31274 TEK-202ENST00000406359 3935 ntTSL 2 BASIC7.48□□□□□ -1.21
HOXC9P31274 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.48□□□□□ -1.21
HOXC9P31274 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.48□□□□□ -1.21
HOXC9P31274 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC7.48□□□□□ -1.21
HOXC9P31274 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
HOXC9P31274 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 RNA5SP507-201ENST00000363603 121 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 U8.4-201ENST00000363626 134 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.48□□□□□ -1.21
HOXC9P31274 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 RNA5SP91-201ENST00000390902 119 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 RPL23AP27-201ENST00000415161 451 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC7.48□□□□□ -1.21
HOXC9P31274 AC005033.1-201ENST00000428904 813 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.48□□□□□ -1.21
HOXC9P31274 AL365220.1-201ENST00000432923 399 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 RPSAP41-201ENST00000439695 860 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 AURKAPS1-201ENST00000451805 1212 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.48□□□□□ -1.21
HOXC9P31274 AC139697.1-201ENST00000548429 745 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 AC233699.1-201ENST00000569955 1168 ntBASIC7.48□□□□□ -1.21
HOXC9P31274 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.48□□□□□ -1.21
HOXC9P31274 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms