Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL122020.1-201ENST00000472287 459 ntBASIC5.86□□□□□ -1.47
MSH3P20585 CR383656.1-201ENST00000484916 377 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.86□□□□□ -1.47
MSH3P20585 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AC007346.2-201ENST00000564816 892 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.86□□□□□ -1.47
MSH3P20585 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AL360012.1-201ENST00000602813 131 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AC015849.6-201ENST00000605454 474 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AL139099.4-201ENST00000614802 114 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AL355974.3-201ENST00000617383 467 ntBASIC5.86□□□□□ -1.47
MSH3P20585 SNX18P12-201ENST00000624821 759 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 GTF2IP4-201ENST00000453092 2054 ntBASIC5.86□□□□□ -1.47
MSH3P20585 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.85□□□□□ -1.47
MSH3P20585 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
MSH3P20585 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSH3P20585 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSH3P20585 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 RNA5SP477-201ENST00000362639 119 ntBASIC5.85□□□□□ -1.47
MSH3P20585 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSH3P20585 OOSP1-201ENST00000398992 1270 ntBASIC5.85□□□□□ -1.47
MSH3P20585 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.85□□□□□ -1.47
MSH3P20585 BX284632.2-201ENST00000421091 399 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 VN1R110P-201ENST00000438988 971 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 AL512605.1-202ENST00000441919 381 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AL359955.2-201ENST00000445380 353 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AC099521.1-201ENST00000482557 334 ntBASIC5.85□□□□□ -1.47
MSH3P20585 GAPDHP71-201ENST00000511530 1003 ntBASIC5.85□□□□□ -1.47
MSH3P20585 Y_RNA.667-201ENST00000516212 107 ntBASIC5.85□□□□□ -1.47
MSH3P20585 RNA5SP438-201ENST00000516561 112 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 PCNAP4-201ENST00000532690 730 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.85□□□□□ -1.47
MSH3P20585 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 GARSP1-201ENST00000570895 719 ntBASIC5.85□□□□□ -1.47
MSH3P20585 TXNP4-201ENST00000575018 310 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.85□□□□□ -1.47
MSH3P20585 AC006115.2-201ENST00000596823 202 ntBASIC5.85□□□□□ -1.47
MSH3P20585 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.85□□□□□ -1.47
MSH3P20585 AC145423.1-201ENST00000605712 336 ntBASIC5.85□□□□□ -1.47
MSH3P20585 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.85□□□□□ -1.47
MSH3P20585 AF117829.2-201ENST00000619538 361 ntBASIC5.85□□□□□ -1.47
MSH3P20585 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 AL078595.2-201ENST00000605309 1780 ntBASIC5.85□□□□□ -1.47
MSH3P20585 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
MSH3P20585 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSH3P20585 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.84□□□□□ -1.47
MSH3P20585 AC005224.3-201ENST00000584683 2140 ntBASIC5.84□□□□□ -1.47
MSH3P20585 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
MSH3P20585 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.84□□□□□ -1.47
MSH3P20585 AC130304.1-201ENST00000622942 2385 ntBASIC5.84□□□□□ -1.47
MSH3P20585 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 RNA5SP273-201ENST00000362484 113 ntBASIC5.84□□□□□ -1.47
MSH3P20585 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSH3P20585 TRAV35-201ENST00000390462 330 ntBASIC5.84□□□□□ -1.47
MSH3P20585 NPM1P38-201ENST00000403835 865 ntBASIC5.84□□□□□ -1.47
MSH3P20585 SNORA11.5-201ENST00000408163 128 ntBASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms