Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SDC1P18827 SNRPCP3-201ENST00000474888 476 ntBASIC5.44□□□□□ -1.54
SDC1P18827 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AC074255.1-201ENST00000511259 501 ntBASIC5.44□□□□□ -1.54
SDC1P18827 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AC022616.2-201ENST00000523185 300 ntBASIC5.44□□□□□ -1.54
SDC1P18827 AC084121.1-201ENST00000533882 835 ntBASIC5.44□□□□□ -1.54
SDC1P18827 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.44□□□□□ -1.54
SDC1P18827 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.44□□□□□ -1.54
SDC1P18827 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.44□□□□□ -1.54
SDC1P18827 AL354950.1-201ENST00000614150 568 ntBASIC5.44□□□□□ -1.54
SDC1P18827 AL157762.1-201ENST00000619612 415 ntBASIC5.44□□□□□ -1.54
SDC1P18827 MIR6806-201ENST00000622141 64 ntBASIC5.44□□□□□ -1.54
SDC1P18827 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SDC1P18827 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SDC1P18827 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SDC1P18827 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SDC1P18827 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 AC137056.2-201ENST00000624055 1958 ntBASIC5.44□□□□□ -1.54
SDC1P18827 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SDC1P18827 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.44□□□□□ -1.54
SDC1P18827 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 LYARP1-201ENST00000436977 1501 ntBASIC5.43□□□□□ -1.54
SDC1P18827 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.43□□□□□ -1.54
SDC1P18827 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 NLRP3P1-201ENST00000622303 1785 ntBASIC5.43□□□□□ -1.54
SDC1P18827 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SDC1P18827 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SDC1P18827 AL121886.1-201ENST00000358609 435 ntBASIC5.43□□□□□ -1.54
SDC1P18827 RNA5SP273-201ENST00000362484 113 ntBASIC5.43□□□□□ -1.54
SDC1P18827 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SDC1P18827 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 RNA5SP431-201ENST00000410312 120 ntBASIC5.43□□□□□ -1.54
SDC1P18827 AC126120.1-201ENST00000431082 470 ntBASIC5.43□□□□□ -1.54
SDC1P18827 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 MTND2P40-201ENST00000436718 841 ntBASIC5.43□□□□□ -1.54
SDC1P18827 NDUFS5P5-201ENST00000437256 321 ntBASIC5.43□□□□□ -1.54
SDC1P18827 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 SNORD125-201ENST00000459538 96 ntBASIC5.43□□□□□ -1.54
SDC1P18827 AC073610.1-201ENST00000489971 396 ntBASIC5.43□□□□□ -1.54
SDC1P18827 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 AC097486.1-201ENST00000515331 210 ntBASIC5.43□□□□□ -1.54
SDC1P18827 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 HMGN2P36-201ENST00000529541 409 ntBASIC5.43□□□□□ -1.54
SDC1P18827 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.43□□□□□ -1.54
SDC1P18827 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 AC079905.1-201ENST00000549280 475 ntBASIC5.43□□□□□ -1.54
SDC1P18827 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 AGGF1P7-201ENST00000562369 913 ntBASIC5.43□□□□□ -1.54
SDC1P18827 AC002310.3-201ENST00000569728 723 ntBASIC5.43□□□□□ -1.54
SDC1P18827 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.43□□□□□ -1.54
SDC1P18827 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 AL683826.1-201ENST00000624104 627 ntBASIC5.43□□□□□ -1.54
SDC1P18827 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.43□□□□□ -1.54
SDC1P18827 AL137058.3-201ENST00000624531 3099 ntBASIC5.43□□□□□ -1.54
SDC1P18827 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
SDC1P18827 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SDC1P18827 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SDC1P18827 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SDC1P18827 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.42□□□□□ -1.54
SDC1P18827 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 TMSB4XP2-201ENST00000335179 210 ntBASIC5.42□□□□□ -1.54
SDC1P18827 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.42□□□□□ -1.54
SDC1P18827 AL159987.1-201ENST00000347911 293 ntBASIC5.42□□□□□ -1.54
SDC1P18827 RN7SKP145-201ENST00000363291 303 ntBASIC5.42□□□□□ -1.54
SDC1P18827 RNU6-167P-201ENST00000384292 106 ntBASIC5.42□□□□□ -1.54
SDC1P18827 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms