Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AP001496.3-201ENST00000580230 913 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 RPL12P48-201ENST00000605620 304 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL157762.1-201ENST00000619612 415 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MIR193BHG-214ENST00000641765 509 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC018628.1-201ENST00000624147 3819 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 SELENOWP1-201ENST00000322792 252 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 GTF3AP1-201ENST00000416942 1004 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 GAPDHP48-201ENST00000436626 961 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 RPL23AP60-201ENST00000450011 454 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 RN7SL57P-201ENST00000493687 290 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC022404.1-201ENST00000555320 273 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC007225.2-201ENST00000562529 256 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 PDZK1P1-202ENST00000425209 1350 ntBASIC5.8□□□□□ -1.48
CCDC3Q9BQI4 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 MTCO1P8-201ENST00000416914 1523 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AP000547.3-204ENST00000588548 2523 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC016739.1-201ENST00000405359 345 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 RN7SKP151-201ENST00000410230 316 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC093155.2-201ENST00000420734 937 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 NME1P1-201ENST00000420914 382 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 RPL34P3-201ENST00000421454 338 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 NMD3P2-201ENST00000421815 761 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC007562.1-201ENST00000421819 517 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 KIF4CP-201ENST00000422742 1279 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC023274.2-201ENST00000445264 521 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC008629.2-201ENST00000503783 483 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 RNA5SP362-201ENST00000516048 118 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 TPM3P3-201ENST00000521343 354 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AC010547.6-201ENST00000571789 193 ntBASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC3Q9BQI4 AL662795.2-201ENST00000624252 3706 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms