Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.4□□□□□ -1.39
CCDC112Q8NEF3 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC112Q8NEF3 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC007938.2-201ENST00000604666 2634 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC092376.2-201ENST00000622621 4116 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC003045.1-201ENST00000398779 713 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 OSTCP4-201ENST00000424397 449 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 GAPDHP14-201ENST00000450472 937 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 RNU1-88P-201ENST00000459274 128 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 MAST4-IT1-201ENST00000514241 658 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 SNORA74.1-201ENST00000516320 180 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 IGHVII-60-1-201ENST00000519079 256 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC026826.3-201ENST00000561747 158 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AL162574.1-201ENST00000615702 950 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 RBMY1HP-201ENST00000382759 1389 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC112Q8NEF3 AC010266.2-201ENST00000564741 3255 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 MFSD8-239ENST00000641590 2479 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 YWHAZP4-201ENST00000392459 708 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 RNA5SP431-201ENST00000410312 120 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 RPL12P24-201ENST00000474907 486 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 RN7SL362P-201ENST00000494228 267 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 NDUFA5P11-201ENST00000567995 343 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC016590.3-201ENST00000611171 753 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC008833.1-201ENST00000611633 691 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 AC119674.1-202ENST00000641333 1860 ntBASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
CCDC112Q8NEF3 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AL031595.2-201ENST00000624215 19071 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 EIF3EP1-201ENST00000433978 1316 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC009784.1-201ENST00000426484 460 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC092106.1-201ENST00000444291 373 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 ZNF619P1-201ENST00000446539 752 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC068491.1-201ENST00000449539 1241 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 AC004129.2-201ENST00000457229 287 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 SNORD125-201ENST00000459538 96 ntBASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.37□□□□□ -1.39
CCDC112Q8NEF3 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms