Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NLRP3P1-201ENST00000622303 1785 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 MIR365B-201ENST00000362317 111 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 SNORA21-201ENST00000362423 132 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 RNU1-134P-201ENST00000362935 165 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.85□□□□□ -1.47
HNF4AP41235 MYL6P5-201ENST00000412707 459 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AL096829.1-201ENST00000413677 457 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC130360.1-201ENST00000425489 1117 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 CUBNP2-201ENST00000443534 1139 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC002553.3-201ENST00000453002 341 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC118758.1-202ENST00000454719 225 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC105918.1-201ENST00000474399 838 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 SNRPCP3-201ENST00000474888 476 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 OR56A7P-201ENST00000524865 941 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC130365.2-201ENST00000525882 1201 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC005000.1-201ENST00000536192 288 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC122134.1-201ENST00000565664 1104 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC007346.1-201ENST00000569208 867 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 AC138473.1-201ENST00000605717 526 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC117490.2-201ENST00000610042 594 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AL080312.2-201ENST00000613001 630 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC096861.1-201ENST00000616652 240 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AL512652.1-201ENST00000619006 500 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC025470.1-201ENST00000510053 2032 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AL606537.1-201ENST00000607258 2011 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 AC232271.1-201ENST00000602455 2715 ntBASIC5.85□□□□□ -1.47
HNF4AP41235 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.85□□□□□ -1.47
HNF4AP41235 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
HNF4AP41235 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HNF4AP41235 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.84□□□□□ -1.47
HNF4AP41235 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.84□□□□□ -1.47
HNF4AP41235 THAP12P9-201ENST00000503971 2360 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HNF4AP41235 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HNF4AP41235 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HNF4AP41235 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.84□□□□□ -1.47
HNF4AP41235 RNU1-65P-201ENST00000363919 148 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 U3.23-201ENST00000391132 200 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.84□□□□□ -1.47
HNF4AP41235 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.84□□□□□ -1.47
HNF4AP41235 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.84□□□□□ -1.47
HNF4AP41235 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.84□□□□□ -1.47
HNF4AP41235 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.84□□□□□ -1.47
HNF4AP41235 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.84□□□□□ -1.47
HNF4AP41235 SEPT14P12-201ENST00000442280 560 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 TRIM60P16-201ENST00000444048 694 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 ZNF619P1-201ENST00000446539 752 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 RAB28P3-201ENST00000448325 597 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 AC022336.1-201ENST00000475510 337 ntBASIC5.84□□□□□ -1.47
HNF4AP41235 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms