Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 MIR4776-2-201ENST00000580204 80 ntBASIC5.53□□□□□ -1.52
SOX3P41225 AC025857.2-201ENST00000602711 238 ntBASIC5.53□□□□□ -1.52
SOX3P41225 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX3P41225 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX3P41225 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SOX3P41225 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.53□□□□□ -1.52
SOX3P41225 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.53□□□□□ -1.52
SOX3P41225 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SOX3P41225 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
SOX3P41225 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 AC016583.1-201ENST00000624221 2431 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC023490.2-201ENST00000359859 470 ntBASIC5.52□□□□□ -1.53
SOX3P41225 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SOX3P41225 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
SOX3P41225 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 PTCD2P2-201ENST00000415579 1095 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 BX284632.2-201ENST00000421091 399 ntBASIC5.52□□□□□ -1.53
SOX3P41225 KRT8P51-201ENST00000438938 274 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AL512605.1-202ENST00000441919 381 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AL359955.2-201ENST00000445380 353 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 OSTCP1-201ENST00000455507 450 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.52□□□□□ -1.53
SOX3P41225 TRBV5-2-201ENST00000489095 273 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.52□□□□□ -1.53
SOX3P41225 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
SOX3P41225 AC244502.2-201ENST00000543361 851 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 AC119403.2-201ENST00000590960 598 ntBASIC5.52□□□□□ -1.53
SOX3P41225 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.52□□□□□ -1.53
SOX3P41225 uc_338.26-201ENST00000612659 160 ntBASIC5.52□□□□□ -1.53
SOX3P41225 SNX18P12-201ENST00000624821 759 ntBASIC5.52□□□□□ -1.53
SOX3P41225 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 AC232271.1-201ENST00000602455 2715 ntBASIC5.52□□□□□ -1.53
SOX3P41225 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.52□□□□□ -1.53
SOX3P41225 AC083837.1-201ENST00000565297 2994 ntBASIC5.52□□□□□ -1.53
SOX3P41225 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SOX3P41225 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AC092451.3-201ENST00000625067 1343 ntBASIC5.51□□□□□ -1.53
SOX3P41225 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 AL161756.3-201ENST00000641216 2071 ntBASIC5.51□□□□□ -1.53
SOX3P41225 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 AC004076.2-201ENST00000620532 3323 ntBASIC5.51□□□□□ -1.53
SOX3P41225 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SOX3P41225 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 SLC20A1P1-201ENST00000413906 956 ntBASIC5.51□□□□□ -1.53
SOX3P41225 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 RPS29P14-201ENST00000431518 171 ntBASIC5.51□□□□□ -1.53
SOX3P41225 PCBP2P1-201ENST00000437262 977 ntBASIC5.51□□□□□ -1.53
SOX3P41225 TUBB4BP6-201ENST00000437576 479 ntBASIC5.51□□□□□ -1.53
SOX3P41225 VN1R110P-201ENST00000438988 971 ntBASIC5.51□□□□□ -1.53
SOX3P41225 BMS1P10-201ENST00000443754 1120 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.51□□□□□ -1.53
SOX3P41225 AL358876.1-201ENST00000453364 1075 ntBASIC5.51□□□□□ -1.53
SOX3P41225 GEMIN2P1-201ENST00000454246 752 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC104164.1-201ENST00000460282 590 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC084754.1-201ENST00000463466 464 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC023245.1-201ENST00000468501 517 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.51□□□□□ -1.53
SOX3P41225 AC124945.1-201ENST00000485133 188 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AC008629.2-201ENST00000503783 483 ntBASIC5.51□□□□□ -1.53
SOX3P41225 RNA5SP271-201ENST00000516700 88 ntBASIC5.51□□□□□ -1.53
SOX3P41225 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.51□□□□□ -1.53
SOX3P41225 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AC092121.1-201ENST00000569452 202 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms