Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AGGF1P7-201ENST00000562369 913 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 AC007346.2-201ENST00000564816 892 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 NANOGP3-201ENST00000605855 286 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
COL5A3P25940 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
COL5A3P25940 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
COL5A3P25940 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.98□□□□□ -1.29
COL5A3P25940 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.98□□□□□ -1.29
COL5A3P25940 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.98□□□□□ -1.29
COL5A3P25940 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 SNURFL-201ENST00000309296 343 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
COL5A3P25940 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.98□□□□□ -1.29
COL5A3P25940 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 MEMO1P4-201ENST00000453590 386 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.98□□□□□ -1.29
COL5A3P25940 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.98□□□□□ -1.29
COL5A3P25940 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.98□□□□□ -1.29
COL5A3P25940 MIR7703-201ENST00000620784 77 ntBASIC6.98□□□□□ -1.29
COL5A3P25940 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.98□□□□□ -1.29
COL5A3P25940 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
COL5A3P25940 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 MT-RNR2-201ENST00000387347 1559 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 ZNF733P-202ENST00000444809 1573 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 AC131971.1-201ENST00000332881 1482 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 DBIP1-201ENST00000401435 260 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 RPL26P29-201ENST00000415623 438 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 TRY2P-201ENST00000448860 689 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 OSTCP1-201ENST00000455507 450 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 AC095055.1-201ENST00000603472 1113 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
COL5A3P25940 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 ZNF840P-201ENST00000504759 1996 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 AL359922.2-201ENST00000581788 3017 ntBASIC6.97□□□□□ -1.29
COL5A3P25940 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL5A3P25940 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL5A3P25940 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
COL5A3P25940 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 RN7SKP95-201ENST00000362860 303 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 RN7SKP6-201ENST00000364795 319 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 AC008171.1-201ENST00000395058 200 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.96□□□□□ -1.29
COL5A3P25940 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 EI24P4-201ENST00000423683 1078 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 TMEM183AP1-205ENST00000432739 290 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC6.96□□□□□ -1.29
COL5A3P25940 AP005403.1-201ENST00000579720 229 ntBASIC6.96□□□□□ -1.29
COL5A3P25940 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL5A3P25940 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.29
COL5A3P25940 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL5A3P25940 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC6.96□□□□□ -1.3
COL5A3P25940 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL5A3P25940 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL5A3P25940 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
COL5A3P25940 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL5A3P25940 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms