Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC012181.1-201ENST00000479895 423 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL096701.3-202ENST00000483736 615 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PSMA2P1-201ENST00000526365 646 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AP000676.2-201ENST00000529711 301 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 LINC02295-201ENST00000557072 374 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 LINC00929-205ENST00000557672 514 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF793-AS1-205ENST00000589025 560 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF85-206ENST00000596476 1259 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC233702.11-201ENST00000598588 333 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF780B-206ENST00000598845 401 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC005261.1-201ENST00000601567 712 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC016727.2-201ENST00000603988 621 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC016405.2-201ENST00000607393 312 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC062037.2-201ENST00000610137 73 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CARMN-212ENST00000614896 536 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 MIR6505-201ENST00000617206 71 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC079597.1-201ENST00000624306 508 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CTNND1-220ENST00000529526 6099 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NXPE3-207ENST00000616286 1832 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NCAPH-202ENST00000427946 2363 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 DNAH10-209ENST00000614082 3484 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL353898.3-201ENST00000624679 1755 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NR1I3-205ENST00000367983 1473 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PTBP2-201ENST00000370197 3057 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PTBP2-202ENST00000370198 3054 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NELL1-201ENST00000298925 3329 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 LINC01427-204ENST00000635299 1978 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 OR11G2-202ENST00000641682 3786 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF33A-208ENST00000628825 2854 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 RECQL-203ENST00000421138 2572 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL031123.3-201ENST00000623345 1837 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 OR5BR1P-201ENST00000524992 1330 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL049776.1-201ENST00000624600 2025 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 MAPK10-329ENST00000641555 2656 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC068044.1-201ENST00000441585 1978 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 GNG5P1-201ENST00000255500 204 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NACAP2-201ENST00000318548 624 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 SPINK6-201ENST00000325630 686 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 RPS4XP8-201ENST00000402039 771 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 VIM2P-201ENST00000402383 1294 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 MIR1269A-201ENST00000408636 105 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC064862.3-201ENST00000411435 571 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL136380.2-201ENST00000411837 492 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL160153.1-201ENST00000415285 429 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL451054.2-201ENST00000420896 202 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC006455.7-201ENST00000422502 392 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC005033.1-201ENST00000428904 813 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 OR51AB1P-201ENST00000429046 620 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC009228.1-203ENST00000430105 432 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC109583.1-201ENST00000432156 268 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 BMS1P19-201ENST00000433925 393 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 RPL23AP16-201ENST00000441715 421 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 COX6CP18-201ENST00000448769 222 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 PROX1-AS1-203ENST00000451396 476 ntTSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC107029.1-201ENST00000484675 465 ntTSL 2 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC025164.1-201ENST00000496249 478 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 SUMO2P17-201ENST00000504438 285 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC015909.1-201ENST00000509943 839 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 RPL7L1P4-201ENST00000513004 707 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 RNA5SP216-201ENST00000516111 123 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 CDC42P3-201ENST00000518493 633 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 OR5F2P-201ENST00000532761 941 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC018653.2-201ENST00000540190 238 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 FLT1-205ENST00000543394 1275 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NPIPP1-203ENST00000547107 1071 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 HP-207ENST00000562526 685 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF283-205ENST00000590950 466 ntTSL 5 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC008622.1-201ENST00000597106 284 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC010320.1-201ENST00000599775 578 ntTSL 3 BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 PRR13P7-201ENST00000605538 430 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 MIR98-201ENST00000606724 119 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AC100812.1-201ENST00000607622 580 ntBASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 FLT1-208ENST00000617835 434 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
VPS9D1Q9Y2B5 AL732618.1-201ENST00000623251 301 ntBASIC8.36□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms