Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 SNORA81-201ENST00000408493 178 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC116036.1-201ENST00000412199 367 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 EEF1B2P8-201ENST00000414101 671 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL512504.1-201ENST00000415494 778 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 MTND1P23-201ENST00000416931 372 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 MARK2P12-201ENST00000420129 585 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 EIF4A1P5-201ENST00000428062 1095 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 MTCO1P53-201ENST00000441633 699 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 OR2L9P-201ENST00000444456 913 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL133217.1-201ENST00000450980 425 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC092155.2-201ENST00000454675 477 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 SULT1D1P-201ENST00000458020 882 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RN7SL390P-201ENST00000470634 284 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RN7SL654P-201ENST00000479178 292 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 NPM1P17-201ENST00000479221 602 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RPL23AP73-201ENST00000492507 471 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC119751.1-201ENST00000513357 765 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RNU5A-7P-201ENST00000515979 116 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 PPIAP6-201ENST00000557078 499 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC092868.3-201ENST00000560515 784 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AP001496.3-201ENST00000580230 913 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AL078623.1-201ENST00000602702 907 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC092794.1-201ENST00000612734 582 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC022106.1-201ENST00000612834 766 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC008759.3-201ENST00000613300 508 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC009283.1-201ENST00000615852 645 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC004232.3-201ENST00000622977 525 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 OR7E91P-202ENST00000642062 1198 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC007012.2-201ENST00000623206 1676 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC027514.1-201ENST00000588561 1603 ntBASIC7.63□□□□□ -1.19
CCDC39Q9UFE4 AC105749.1-201ENST00000631338 2008 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC093297.3-201ENST00000607056 2517 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 TRIM53CP-201ENST00000531490 1354 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC010401.2-201ENST00000575137 4934 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP188-201ENST00000362916 129 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 SNORD8-201ENST00000363915 110 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RN7SKP189-201ENST00000365042 330 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC096533.1-201ENST00000411645 353 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AL138479.1-201ENST00000426913 484 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 MTATP6P13-201ENST00000438531 667 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 SOCS5P1-201ENST00000440415 949 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RPS7P4-201ENST00000444127 582 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 EEF1B2P5-201ENST00000444820 548 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 VNN3-210ENST00000450865 596 ntTSL 4 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RPS10P28-201ENST00000480396 498 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RN7SL868P-201ENST00000485915 303 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RPL10P7-201ENST00000495649 625 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AP001960.1-201ENST00000506494 658 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC017007.1-201ENST00000511960 415 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 RPL41P2-201ENST00000544920 409 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms