Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 RNA5SP91-201ENST00000390902 119 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 CRIP1P1-201ENST00000427567 185 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC104843.2-201ENST00000427666 297 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 BX679664.2-201ENST00000439282 283 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 RPL36AP39-201ENST00000445859 318 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 RPL31P15-201ENST00000449770 338 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 RN7SL570P-201ENST00000484405 292 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 MRPS16P1-201ENST00000523462 412 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 HMGB1P42-201ENST00000532126 553 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 HSPE1P2-201ENST00000554777 306 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL163952.1-202ENST00000569625 600 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AP001496.3-201ENST00000580230 913 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC063977.5-201ENST00000601044 974 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AC006600.2-201ENST00000624834 2506 ntBASIC5.82□□□□□ -1.48
LHX3Q9UBR4 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LHX3Q9UBR4 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 TMSB4XP4-201ENST00000323496 618 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 MTND4LP17-201ENST00000414607 293 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 RANP7-201ENST00000418085 644 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 H3F3BP1-201ENST00000440551 403 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC064862.4-201ENST00000442180 334 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 HMGN1P36-201ENST00000446623 298 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 RPL12P39-201ENST00000455456 496 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC090589.1-201ENST00000473109 362 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 RPS3AP15-201ENST00000483874 781 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 PPIAP19-201ENST00000486414 492 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 DUTP1-201ENST00000493631 470 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 OR7E157P-201ENST00000494376 911 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC074255.1-201ENST00000511259 501 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 CYCSP22-201ENST00000517555 339 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 NPM1P42-201ENST00000560329 862 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC010547.6-201ENST00000571789 193 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AL513327.3-201ENST00000602618 469 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AL133481.2-203ENST00000607558 139 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC127024.6-201ENST00000621598 424 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AC026124.2-201ENST00000621847 656 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.81□□□□□ -1.48
LHX3Q9UBR4 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LHX3Q9UBR4 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms