Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 RPS4XP5-201ENST00000419038 768 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC009784.1-201ENST00000426484 460 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 PSMD10P2-201ENST00000432890 672 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC015983.1-201ENST00000441577 373 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 FTLP8-201ENST00000446770 267 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AL034369.1-201ENST00000453808 477 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 TREML3P-201ENST00000457327 501 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC073648.3-201ENST00000504939 925 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC021146.10-201ENST00000515628 706 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 SNORA74.1-201ENST00000516320 180 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AL512430.4-201ENST00000603085 613 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AL390877.1-201ENST00000605704 214 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 GNL2P1-201ENST00000451274 2190 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 AC011933.2-201ENST00000578539 2790 ntBASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
CCDC28BQ9BUN5 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC144833.1-201ENST00000567953 4089 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC083899.1-201ENST00000454465 3819 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 RNA5SP77-201ENST00000365394 120 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 OOSP1-201ENST00000398992 1270 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AL132875.1-201ENST00000403623 949 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 CTSL3P-202ENST00000412179 788 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 PSMD8P1-201ENST00000436275 769 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC015524.1-201ENST00000491585 472 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC008629.2-201ENST00000503783 483 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 GOLGA5P1-201ENST00000507317 980 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 CR383658.1-201ENST00000514609 734 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 SEPT10P1-201ENST00000517342 1162 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC005632.2-201ENST00000564271 828 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AP005136.2-201ENST00000583253 1049 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC063977.7-201ENST00000594454 337 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC099777.1-201ENST00000603779 1070 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AL078624.2-201ENST00000605063 554 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 AC021766.1-201ENST00000624404 741 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 CLUHP10-201ENST00000631979 980 ntBASIC5.65□□□□□ -1.5
CCDC28BQ9BUN5 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 HSPD1P7-201ENST00000447985 1686 ntBASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.65□□□□□ -1.51
CCDC28BQ9BUN5 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC28BQ9BUN5 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms