Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC079064.1-201ENST00000528365 362 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 FCGR1CP-201ENST00000579737 1127 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC100832.2-201ENST00000582080 776 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AL645933.2-201ENST00000606743 1207 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA3P55318 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 AP003108.4-201ENST00000623917 878 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA3P55318 AC073136.1-201ENST00000449426 2884 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 MFSD8-219ENST00000641228 2559 ntBASIC4.28□□□□□ -1.72
FOXA3P55318 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
FOXA3P55318 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
FOXA3P55318 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
FOXA3P55318 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXA3P55318 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXA3P55318 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXA3P55318 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXA3P55318 GGA1-205ENST00000405147 575 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA3P55318 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 RPS7P8-201ENST00000418311 581 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 RPL6P21-201ENST00000418672 846 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 RPS4XP5-201ENST00000419038 768 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 RPSAP65-201ENST00000429660 595 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 AL445928.1-201ENST00000435545 222 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 TCEA1P3-201ENST00000443005 880 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 RPS7P4-201ENST00000444127 582 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXA3P55318 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 COX6B1P2-201ENST00000489624 230 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 RN7SL350P-201ENST00000492591 299 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 AL049874.2-201ENST00000492636 288 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 AC009567.2-201ENST00000502989 349 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC094105.1-201ENST00000509745 560 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC016559.2-201ENST00000510759 359 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 TMEM97P2-201ENST00000517841 403 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA3P55318 VDAC2P2-201ENST00000544463 901 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 LSM3P2-201ENST00000551246 273 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA3P55318 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 COX6CP7-201ENST00000597056 208 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA3P55318 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 CASC19-246ENST00000641625 1606 ntBASIC4.27□□□□□ -1.73
FOXA3P55318 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA3P55318 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
FOXA3P55318 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA3P55318 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 GDA-209ENST00000545168 5362 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA3P55318 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA3P55318 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA3P55318 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms