Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL596268.1-201ENST00000427910 1048 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 CHCHD4P5-201ENST00000436684 427 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXA1P49639 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 TXNP2-201ENST00000443918 295 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 VPS25P1-201ENST00000455691 508 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC092902.1-201ENST00000486999 259 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 PFN2-213ENST00000494827 793 ntTSL 4 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC114940.1-201ENST00000512162 1265 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 RNU6-415P-201ENST00000516252 97 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 MTND1P6-201ENST00000523621 946 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 MTND5P21-201ENST00000531961 522 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.11□□□□□ -1.59
HOXA1P49639 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC010287.1-201ENST00000566916 357 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 FCGR1CP-201ENST00000579737 1127 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXA1P49639 RPS11-205ENST00000599561 430 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.11□□□□□ -1.59
HOXA1P49639 BNIP3P27-201ENST00000599991 412 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC242628.1-201ENST00000606810 391 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXA1P49639 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC084036.1-201ENST00000609190 508 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 MIR6085-201ENST00000618314 110 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC022306.3-201ENST00000619930 550 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 OR51B2-201ENST00000624187 939 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC061999.1-201ENST00000624454 177 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC022919.1-201ENST00000624979 626 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AP001002.2-201ENST00000625137 386 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 AC027559.1-201ENST00000636288 271 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC116667.2-201ENST00000641075 823 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 AC079776.5-201ENST00000641920 211 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXA1P49639 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXA1P49639 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 AC126474.2-201ENST00000623268 1750 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA1P49639 AOX3P-204ENST00000491025 2107 ntBASIC5.11□□□□□ -1.59
HOXA1P49639 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA1P49639 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 RNA5SP429-201ENST00000363688 109 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 SNORD94-201ENST00000386037 137 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXA1P49639 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 AL590635.1-201ENST00000406314 586 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 RN7SKP97-201ENST00000410966 333 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 RN7SKP279-201ENST00000411383 298 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 MICG-208ENST00000416822 132 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 YWHAZP5-201ENST00000419975 730 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 RNF2P1-201ENST00000442955 1010 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 EIF3LP2-201ENST00000457262 807 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AL022319.1-201ENST00000458183 1167 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC016687.1-201ENST00000482574 353 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC111000.6-201ENST00000514471 709 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 RFPL4AP5-201ENST00000514977 504 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 IGKV1D-32-201ENST00000517449 318 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA1P49639 SEC11B-201ENST00000518383 499 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 OR7E10P-201ENST00000526420 991 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms