Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC023194.2-201ENST00000465398 406 ntBASIC5.48□□□□□ -1.53
SDC1P18827 RN7SL193P-201ENST00000491708 276 ntBASIC5.48□□□□□ -1.53
SDC1P18827 GLUD1P3-202ENST00000508551 200 ntBASIC5.48□□□□□ -1.53
SDC1P18827 GAPDHP71-201ENST00000511530 1003 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 AC111000.6-201ENST00000514471 709 ntBASIC5.48□□□□□ -1.53
SDC1P18827 SETP21-201ENST00000514799 892 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 AC139365.2-201ENST00000517972 253 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.48□□□□□ -1.53
SDC1P18827 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.48□□□□□ -1.53
SDC1P18827 AC139697.1-201ENST00000548429 745 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.48□□□□□ -1.53
SDC1P18827 AC006530.1-201ENST00000555980 571 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 AP001437.1-201ENST00000608783 456 ntBASIC5.48□□□□□ -1.53
SDC1P18827 MIR6793-201ENST00000612376 63 ntBASIC5.48□□□□□ -1.53
SDC1P18827 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.48□□□□□ -1.53
SDC1P18827 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.48□□□□□ -1.53
SDC1P18827 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.48□□□□□ -1.53
SDC1P18827 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.48□□□□□ -1.53
SDC1P18827 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 AC090181.3-201ENST00000624777 1514 ntBASIC5.48□□□□□ -1.53
SDC1P18827 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 UGT2B24P-201ENST00000514441 1597 ntBASIC5.47□□□□□ -1.53
SDC1P18827 CASC19-260ENST00000641828 2001 ntBASIC5.47□□□□□ -1.53
SDC1P18827 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.47□□□□□ -1.53
SDC1P18827 MIR1275-201ENST00000408770 80 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 AL158827.1-201ENST00000416300 391 ntBASIC5.47□□□□□ -1.53
SDC1P18827 BX284632.2-201ENST00000421091 399 ntBASIC5.47□□□□□ -1.53
SDC1P18827 OR10T1P-201ENST00000424327 947 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 AC138761.5-201ENST00000433967 325 ntBASIC5.47□□□□□ -1.53
SDC1P18827 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 AL512605.1-202ENST00000441919 381 ntBASIC5.47□□□□□ -1.53
SDC1P18827 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 AL359955.2-201ENST00000445380 353 ntBASIC5.47□□□□□ -1.53
SDC1P18827 TIMM8BP2-201ENST00000445940 251 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 RN7SL57P-201ENST00000493687 290 ntBASIC5.47□□□□□ -1.53
SDC1P18827 RBBP4P1-201ENST00000502424 1276 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 WBP1LP3-201ENST00000523033 208 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.47□□□□□ -1.53
SDC1P18827 AC137627.1-201ENST00000545761 289 ntBASIC5.47□□□□□ -1.53
SDC1P18827 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.47□□□□□ -1.53
SDC1P18827 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 AC007956.1-201ENST00000555623 542 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC5.47□□□□□ -1.53
SDC1P18827 AC096996.1-201ENST00000563813 325 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.47□□□□□ -1.53
SDC1P18827 MIR3154-201ENST00000577829 84 ntBASIC5.47□□□□□ -1.53
SDC1P18827 MIR744-201ENST00000578242 98 ntBASIC5.47□□□□□ -1.53
SDC1P18827 AC008507.3-201ENST00000585753 472 ntBASIC5.47□□□□□ -1.53
SDC1P18827 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 CASC19-274ENST00000642018 970 ntBASIC5.47□□□□□ -1.53
SDC1P18827 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.47□□□□□ -1.53
SDC1P18827 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SDC1P18827 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.47□□□□□ -1.53
SDC1P18827 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SDC1P18827 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.53
SDC1P18827 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
SDC1P18827 AL161912.4-201ENST00000623889 2468 ntBASIC5.46□□□□□ -1.54
SDC1P18827 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SDC1P18827 COX6B1P3-201ENST00000312310 260 ntBASIC5.46□□□□□ -1.54
SDC1P18827 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.46□□□□□ -1.54
SDC1P18827 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms