Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 FTLP8-201ENST00000446770 267 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 NPM1P19-201ENST00000450070 712 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AC011476.1-201ENST00000466725 307 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 RN7SL177P-201ENST00000476596 299 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 SETP21-201ENST00000514799 892 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AP000648.1-201ENST00000529682 397 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 AC073916.1-201ENST00000545095 130 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 NPIPB1P-202ENST00000588786 828 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AL031601.1-201ENST00000605702 394 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 AC069542.2-201ENST00000624816 216 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
HOXD4P09016 OR7A1P-202ENST00000641542 1158 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXD4P09016 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 AL121768.1-201ENST00000613917 2544 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 AC006600.2-201ENST00000624834 2506 ntBASIC5.49□□□□□ -1.53
HOXD4P09016 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
HOXD4P09016 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXD4P09016 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXD4P09016 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 RBPJP7-201ENST00000442803 1447 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 RBPJP5-201ENST00000449433 1447 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AC008627.1-201ENST00000517511 1704 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 AC068870.3-201ENST00000625077 2536 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 GNL2P1-201ENST00000451274 2190 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 RNA5SP273-201ENST00000362484 113 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 SNORA43.1-201ENST00000364863 140 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 AL096800.1-201ENST00000405326 893 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 MTATP6P19-201ENST00000413797 659 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 CYP4F30P-202ENST00000420048 405 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXD4P09016 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXD4P09016 AL122020.1-201ENST00000472287 459 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AC083795.1-201ENST00000491760 320 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 Y_RNA.667-201ENST00000516212 107 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AC020937.1-201ENST00000519677 1013 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 WBP1LP3-201ENST00000523033 208 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXD4P09016 AC079600.1-201ENST00000550326 297 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AC068305.2-201ENST00000550567 1205 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXD4P09016 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXD4P09016 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.48□□□□□ -1.53
HOXD4P09016 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.48□□□□□ -1.53
HOXD4P09016 AC108673.3-201ENST00000609183 335 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
HOXD4P09016 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.48□□□□□ -1.53
HOXD4P09016 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
HOXD4P09016 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HOXD4P09016 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.48□□□□□ -1.53
HOXD4P09016 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.47□□□□□ -1.53
HOXD4P09016 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HOXD4P09016 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms