Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AL645733.1-201ENST00000402250 217 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 RPL23AP60-201ENST00000450011 454 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 HIGD1AP8-201ENST00000453927 274 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC079841.1-201ENST00000481228 950 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 RPL38P3-201ENST00000484463 213 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC093890.1-201ENST00000502554 540 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 DCN-210ENST00000547568 823 ntTSL 3 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 CR383656.6-201ENST00000550518 394 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC007494.1-201ENST00000562293 760 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC015720.2-201ENST00000567709 334 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 MIR132-201ENST00000591554 101 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC005840.5-201ENST00000619166 599 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 AC011504.1-201ENST00000623331 4103 ntBASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
SHROOM4Q9ULL8 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 TPT1-204ENST00000379060 764 ntTSL 5 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 SLC35E1P1-201ENST00000419313 864 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 OR5W1P-201ENST00000423705 938 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AC099677.3-201ENST00000427081 395 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 HMGB3P24-201ENST00000433260 622 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 ST13P12-201ENST00000508958 1094 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 HCG18-243ENST00000602498 327 ntTSL 3 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 AC087516.1-201ENST00000561236 2428 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 MRE11P1-201ENST00000464884 2127 ntBASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
SHROOM4Q9ULL8 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AL589647.1-201ENST00000402485 466 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 OR13K1P-201ENST00000444577 975 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 RPS29P22-201ENST00000472363 168 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 OARD1-211ENST00000480585 829 ntTSL 3 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 ELOCP28-201ENST00000590044 317 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC091193.1-201ENST00000604640 448 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 PPATP2-201ENST00000605635 508 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC016590.3-201ENST00000611171 753 ntBASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AFP-201ENST00000226359 1914 ntTSL 5 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC11.07□□□□□ -0.64
SHROOM4Q9ULL8 AC009804.1-201ENST00000400949 179 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AL357752.1-201ENST00000412817 349 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AL663074.2-201ENST00000440621 479 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 CT45A11P-201ENST00000448043 1134 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 RPL7P61-201ENST00000451721 751 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 ACA64.4-201ENST00000459070 127 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 RPS21P4-201ENST00000487122 248 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 CEACAMP10-202ENST00000495431 496 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 AL359513.1-201ENST00000614364 557 ntBASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
SHROOM4Q9ULL8 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms