Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 SNORA74A-201ENST00000364089 198 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 RNU105B-201ENST00000364478 208 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 OR3A2-201ENST00000408891 1076 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL356968.2-201ENST00000412769 1257 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL354890.1-201ENST00000413730 346 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 MTND4LP21-201ENST00000415303 295 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 VN1R110P-201ENST00000438988 971 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL163193.1-201ENST00000444895 788 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC114728.1-201ENST00000488289 483 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AC090651.1-201ENST00000567865 634 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 RPL12P48-201ENST00000605620 304 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AP000864.1-201ENST00000609424 650 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 TCL6_3.1-201ENST00000619064 137 ntBASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.09□□□□□ -1.43
HDDC3Q8N4P3 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.09□□□□□ -1.44
HDDC3Q8N4P3 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AP000547.3-204ENST00000588548 2523 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC119674.1-213ENST00000641177 1386 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL117378.2-201ENST00000622916 1337 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 SNRPEP6-201ENST00000407465 277 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 RNU4-64P-201ENST00000410795 131 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 BX284632.2-201ENST00000421091 399 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL512605.1-202ENST00000441919 381 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL512593.1-201ENST00000444758 779 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL359955.2-201ENST00000445380 353 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 RN7SL610P-201ENST00000463845 291 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC083795.1-201ENST00000491760 320 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 EIF3LP3-201ENST00000495197 822 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 RNA5SP362-201ENST00000516048 118 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AP005639.1-201ENST00000526939 192 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 MIR4776-2-201ENST00000580204 80 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 AC003992.1-201ENST00000635364 557 ntBASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDDC3Q8N4P3 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms