Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC133552.4-201ENST00000576103 676 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 SDR42E1P1-201ENST00000611327 477 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AP001264.1-201ENST00000620602 703 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AL132640.3-201ENST00000630473 177 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 OR7E91P-202ENST00000642062 1198 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 AC096921.2-201ENST00000561507 1916 ntBASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PDLIM3Q53GG5 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 IMMTP1-201ENST00000435590 2219 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RNU6-1331P-201ENST00000363658 106 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RNA5SP485-201ENST00000365053 119 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 NOX1-203ENST00000372964 661 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RNA5SP178-201ENST00000410380 128 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 Y_RNA.625-201ENST00000411256 107 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 USP9YP19-201ENST00000412165 485 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC096644.3-201ENST00000416788 338 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AL360013.1-201ENST00000419031 858 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 CYP4F30P-202ENST00000420048 405 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RPL23AP85-201ENST00000421838 433 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ARAFP1-201ENST00000422172 605 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 H3F3BP1-201ENST00000440551 403 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 PFN1P11-201ENST00000445829 389 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AL022237.1-201ENST00000446663 358 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 TVP23CP1-201ENST00000450317 639 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 SCARNA5-201ENST00000516201 276 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC010547.6-201ENST00000571789 193 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 OR7E18P-201ENST00000592589 702 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC091133.5-201ENST00000603088 301 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC124916.2-201ENST00000604416 224 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC211433.2-201ENST00000608433 387 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AL356608.1-201ENST00000610034 820 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AL135999.3-201ENST00000610501 812 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC022467.1-201ENST00000614738 749 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 AC092692.1-201ENST00000623625 2595 ntBASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.23□□□□□ -1.57
PDLIM3Q53GG5 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms