Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AC137056.2-201ENST00000624055 1958 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 RPL7L1P9-201ENST00000431298 745 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AC023245.1-201ENST00000468501 517 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 RPL17P2-201ENST00000491913 451 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 SCARNA6.1-201ENST00000516989 238 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AC133644.2-201ENST00000608142 540 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC005294.1-201ENST00000355509 281 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 FAR2P2-201ENST00000413041 594 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 FAR2P4-202ENST00000425399 584 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 EIF2S2P3-201ENST00000428356 999 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC096775.1-201ENST00000437724 448 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AL450996.1-201ENST00000445574 1202 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 FAR2P1-206ENST00000449736 709 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RN7SL459P-201ENST00000481078 302 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC096996.1-201ENST00000563813 325 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC087763.1-201ENST00000603391 286 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RN7SKP28-201ENST00000364770 305 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AL807761.1-201ENST00000417622 171 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RPL7P61-201ENST00000451721 751 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 VDAC2P4-201ENST00000452925 711 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 OR4A42P-201ENST00000531397 938 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AC074050.1-201ENST00000563247 211 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 uc_338.18-201ENST00000615451 175 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 AL118522.2-201ENST00000616045 615 ntBASIC7.07□□□□□ -1.28
CCDC88AQ3V6T2 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 AC010329.1-201ENST00000593903 8328 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 RPS26P13-201ENST00000419030 330 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 AC007494.1-201ENST00000562293 760 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 RBM22P12-201ENST00000567098 1255 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 MIR4311-201ENST00000580794 100 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 RNU4ATAC-201ENST00000580972 127 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 AC000068.2-201ENST00000608816 460 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 MIR378J-201ENST00000611988 109 ntBASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
CCDC88AQ3V6T2 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms