Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC134669.1-201ENST00000581275 672 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC090616.2-202ENST00000584248 222 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC015818.6-201ENST00000584274 634 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC068020.1-201ENST00000594215 661 ntBASIC7.29□□□□□ -1.24
LIG3P49916 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 AC130352.1-201ENST00000602979 661 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL591222.2-201ENST00000604443 754 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC004492.1-201ENST00000607036 742 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL161931.1-201ENST00000612768 246 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL121809.2-201ENST00000613169 341 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC006338.2-201ENST00000616864 791 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC139769.3-201ENST00000618383 175 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC007347.2-201ENST00000623044 180 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC091965.5-201ENST00000624785 342 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL392088.2-201ENST00000637607 285 ntBASIC7.29□□□□□ -1.24
LIG3P49916 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 CREM-216ENST00000429130 1476 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 AC006042.3-201ENST00000454684 1469 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.29□□□□□ -1.24
LIG3P49916 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 AC007159.1-201ENST00000566529 4706 ntBASIC7.29□□□□□ -1.24
LIG3P49916 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 AC023886.2-201ENST00000321285 411 ntBASIC7.28□□□□□ -1.24
LIG3P49916 OR2T10-201ENST00000330500 1049 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
LIG3P49916 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
LIG3P49916 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 MIR431-201ENST00000385266 114 ntBASIC7.28□□□□□ -1.24
LIG3P49916 ATP5F1P3-201ENST00000397213 657 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL117344.1-201ENST00000407196 616 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 AL593851.1-201ENST00000426171 157 ntBASIC7.28□□□□□ -1.24
LIG3P49916 MYO5BP3-201ENST00000431872 1279 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 RPL14P5-201ENST00000436474 730 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC096632.2-201ENST00000438139 1239 ntBASIC7.28□□□□□ -1.24
LIG3P49916 ELOCP8-201ENST00000439309 332 ntBASIC7.28□□□□□ -1.24
LIG3P49916 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 ELOCP15-201ENST00000442090 332 ntBASIC7.28□□□□□ -1.24
LIG3P49916 DBIL5P2-201ENST00000443827 253 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL158214.1-201ENST00000444423 404 ntBASIC7.28□□□□□ -1.24
LIG3P49916 CYCSP44-201ENST00000448560 313 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 RPS10P28-201ENST00000480396 498 ntBASIC7.28□□□□□ -1.24
LIG3P49916 LINC00888-204ENST00000487386 421 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC080014.1-201ENST00000496877 1201 ntBASIC7.28□□□□□ -1.24
LIG3P49916 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 RBMS2P1-201ENST00000525031 1226 ntBASIC7.28□□□□□ -1.24
LIG3P49916 MTCO3P15-201ENST00000526563 574 ntBASIC7.28□□□□□ -1.24
LIG3P49916 NDUFA3P2-201ENST00000531434 232 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 NBEAP1-201ENST00000554452 979 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC7.28□□□□□ -1.24
LIG3P49916 AL356986.1-201ENST00000604085 341 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC106791.2-201ENST00000604680 391 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC7.28□□□□□ -1.24
LIG3P49916 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC7.28□□□□□ -1.24
LIG3P49916 AC122133.1-201ENST00000613964 233 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AC007786.3-201ENST00000615154 596 ntBASIC7.28□□□□□ -1.24
LIG3P49916 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 AC078909.2-201ENST00000620584 398 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL121985.3-201ENST00000620690 523 ntBASIC7.28□□□□□ -1.24
LIG3P49916 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.28□□□□□ -1.24
LIG3P49916 AC012629.3-201ENST00000623397 328 ntBASIC7.28□□□□□ -1.24
LIG3P49916 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC7.28□□□□□ -1.24
LIG3P49916 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC7.28□□□□□ -1.24
LIG3P49916 ZNF663P-202ENST00000641770 1131 ntBASIC7.28□□□□□ -1.24
LIG3P49916 AL596275.2-203ENST00000641951 371 ntBASIC7.28□□□□□ -1.24
LIG3P49916 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms