Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MT-RNR2-201ENST00000387347 1559 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC011369.2-201ENST00000624423 1567 ntBASIC6.54□□□□□ -1.36
BDNFP23560 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 RNU1-134P-201ENST00000362935 165 ntBASIC6.54□□□□□ -1.36
BDNFP23560 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.54□□□□□ -1.36
BDNFP23560 RNU11-6P-201ENST00000391127 133 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC004386.1-201ENST00000393214 761 ntBASIC6.54□□□□□ -1.36
BDNFP23560 RNA5SP156-201ENST00000410250 110 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.54□□□□□ -1.36
BDNFP23560 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC6.54□□□□□ -1.36
BDNFP23560 FTO-202ENST00000431610 707 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 TXNP2-201ENST00000443918 295 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.54□□□□□ -1.36
BDNFP23560 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC098847.1-201ENST00000473094 348 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.54□□□□□ -1.36
BDNFP23560 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.54□□□□□ -1.36
BDNFP23560 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.54□□□□□ -1.36
BDNFP23560 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 CYCSP38-201ENST00000559840 322 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 AC008507.3-201ENST00000585753 472 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC6.54□□□□□ -1.36
BDNFP23560 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 AC084036.1-201ENST00000609190 508 ntBASIC6.54□□□□□ -1.36
BDNFP23560 AC022726.2-201ENST00000634673 547 ntBASIC6.54□□□□□ -1.36
BDNFP23560 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BDNFP23560 AC024651.2-201ENST00000562480 2098 ntBASIC6.54□□□□□ -1.36
BDNFP23560 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BDNFP23560 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BDNFP23560 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
BDNFP23560 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 AC006484.1-201ENST00000435086 1884 ntBASIC6.53□□□□□ -1.36
BDNFP23560 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.53□□□□□ -1.36
BDNFP23560 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
BDNFP23560 RN7SKP275-201ENST00000364626 301 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AL132875.1-201ENST00000403623 949 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AL035696.2-201ENST00000407941 709 ntBASIC6.53□□□□□ -1.36
BDNFP23560 MIR1282-201ENST00000408865 101 ntBASIC6.53□□□□□ -1.36
BDNFP23560 BTF3P9-201ENST00000418784 283 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 AC046176.1-201ENST00000435260 1170 ntBASIC6.53□□□□□ -1.36
BDNFP23560 VN1R48P-201ENST00000448149 1036 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 AC023194.2-201ENST00000465398 406 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AC021205.1-201ENST00000468797 348 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 PANCR-201ENST00000503456 493 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 RNA5SP434-201ENST00000516647 121 ntBASIC6.53□□□□□ -1.36
BDNFP23560 RNA5SP400-201ENST00000517155 111 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AC020937.1-201ENST00000519677 1013 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 AC084759.1-201ENST00000561168 290 ntBASIC6.53□□□□□ -1.36
BDNFP23560 MIR3189-201ENST00000578735 73 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 AC068768.2-201ENST00000602352 343 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.53□□□□□ -1.36
BDNFP23560 TCL6_3.1-201ENST00000619064 137 ntBASIC6.53□□□□□ -1.36
BDNFP23560 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.53□□□□□ -1.36
BDNFP23560 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.53□□□□□ -1.36
BDNFP23560 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
BDNFP23560 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
BDNFP23560 AC022325.1-201ENST00000502748 2199 ntBASIC6.52□□□□□ -1.36
BDNFP23560 AC024587.1-201ENST00000505925 2157 ntBASIC6.52□□□□□ -1.36
BDNFP23560 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms